Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05027 ATGAGCAATCCTTCTCTTACACTTGTTTCTGAATCTTTTATCAAACCATATCCTCCGATTGAAGACTCAAAACAAATATGCTATTTAGCACCTTGGGATATTGCTATGTTATCTACAAACTATATCCAAAAGGGTCTTCTATTCAAAAAACCAACATCATCATTAAACCAGCAACATTTCATTGAGAATCTAGTAAACAAACTCAAACACTCTCTTTCTCTTACACTTTTCCATTTCTATCCTCTCTCGGGTCGTCTTGTTATCAAGAAAATAGAAGATCCTCTTTCTTACTCTGTTTATGTAGACTGCAAAAACAGTCTTGGTGCTAAATTTATTCATGCAACTTTAGATATCACCATCAATGATATTCTCTCACCTATTGATGTCCCACACTTTGTTCATTCGTTTTTTGATCACCACAAAGCACTCAACCATGATGGTTGCACCATGTCTTTGTTATCAATTCAAGTCACTGAATTATTAGATGGTGTTTTGATAGGTTGTTCCATGAATCATTGTATTGGTGATGGAAATGCTTATTGGAATTTCTTCAACACATTTTCCAAGATATTTCAAAATGATAATCATGTTTCACATCAACCTATCAACACTAGATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTCCCTTTCAAACATGAAGACGAGTTTATTCATAGATACGATGAAACAGCCATTTTAAGAGAGAGAATATTTCATTTTTCAGCAGAGTCTATAGCGAAACTTAAAGCAAAAGCTAACAAAGAAATAGAATCTATTACAAACAAGATCTCTTCCTTTCAATCTTTATCAGCATTAGTTTGGAGATCTATAACTCGTGCACGTCAACTAGAACATGATCAGAGAACGACTTGTAAATTGGCTGTAAACAATCGAACAAGAATGAAACCGTCTCTTCCTAACGAATATTTTGGGAATTCAATTTCTGCAACGAGTACTGATACCACAGTCGGGGAGTTGTTGGAGAATGATCTAGGATGGGCAGCATGGAAGATTCATACTGCCATTACAAATCATGATGATAAAGTGGTGAGAAAATGGGTTGAAAAATGGTTACATTCGCCTTTTGTGTATCGAATGGATTTGTTCTTTGATCCTTATACTGTGATGATGGGTAGTTCACCAAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAAGCTTTAGCAGTTAGAAGTGGGTATGCTAATAAATTTGATGGAAAAATAACATCATATCCAGGTCAAGAAGGAGGAGGGAGCATTGATCTTGAAGTGTGTCTTTCACCAAATAAAATGATGGCGCTAGAAGCCGATGAAGAATTTATAAGTTCAACTTCTATGTTTAATCCATTATTCTAA 1368 0.3509 MSNPSLTLVSESFIKPYPPIEDSKQICYLAPWDIAMLSTNYIQKGLLFKKPTSSLNQQHFIENLVNKLKHSLSLTLFHFYPLSGRLVIKKIEDPLSYSVYVDCKNSLGAKFIHATLDITINDILSPIDVPHFVHSFFDHHKALNHDGCTMSLLSIQVTELLDGVLIGCSMNHCIGDGNAYWNFFNTFSKIFQNDNHVSHQPINTRWFPEGYGPIINLPFKHEDEFIHRYDETAILRERIFHFSAESIAKLKAKANKEIESITNKISSFQSLSALVWRSITRARQLEHDQRTTCKLAVNNRTRMKPSLPNEYFGNSISATSTDTTVGELLENDLGWAAWKIHTAITNHDDKVVRKWVEKWLHSPFVYRMDLFFDPYTVMMGSSPRFNMYGNEFGMGKALAVRSGYANKFDGKITSYPGQEGGGSIDLEVCLSPNKMMALEADEEFISSTSMFNPLF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05027 455 Gene3D - 2 212 IPR023213 -
Trre6g05027 455 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 445 - -
Trre6g05027 455 FunFam Tryptamine hydroxycinnamoyl transferase 222 441 - -
Trre6g05027 455 Coils Coil 244 271 - -
Trre6g05027 455 Gene3D - 220 440 IPR023213 -
Trre6g05027 455 Pfam Transferase family 6 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05027 Trre-Chr6 52796237 52797604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05027 48 439 Monolignol Biosynthesis Gene Families AT5G48930 25.653 3.27e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05027 - - gmx:100787228 645.195