Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05023 ATGATGAGTTCCTCTGCAGTTCAACATGTTTCAGAATGTTTTATCAAACCACTTTTCCCCATTCAAGAATCAAAACAAATATGCTATTTAACAACTTGGGATATTGCAATGTTATCTATGCATTATATCCAAAAAGGCTTGTTATTCAAAAAGCCACCAACTCCAAATAATCATCAAGATTTCATTCATAATTTTTTGGAGAATCTTAAACAATCTATTTCTCTAGCTCTCTTCCATTTCTATCCACTATCCGGTCGCCTTGTCACACAAAAAACTCAAGAGCCTCCATCTTATTCGGTTTTCGTTGATTGTAGTAACGATAACCCGGGAGCTAGATTCATCTATGGAACTTTAGATGCAACTATATATGATATCCTATCGCCGGTTGATCATCCACCGGTCGTGGACTCATTGTTTGATCTTGATCGAGCAATCAATCATGATGGCCATACCATGCCATTGTTATCCATTCAAGTAACTGAGCTAGTGGATGGTGTTTTCGTAGGTTGTTCCATGAATCATTGTATTGGTGATGGGACTTCTTTTTGGAATTTCTTCAATGTGTGGTCGGAAATATTTCAAGCTCGAGAGAAAGGTCGTGATGTTGTCATGTCACGCCAACCATTTCACAATCGTTGGTTCTTAGAAGGTTGCGGTCCACTAATTAATCTTCCGTTCAAACATCATGACGAGTTTACAAGTAGATTTGAAGCGCCGAAGTTGAGAGAGAGATTCTTCCATTTTAGTGCGGAGTCTATTGCAAAACTGAAAGCAAAGGCCAATGAGGAAGCTAATACAAATGAAATCTCTTCGTTCCAATCATTATCGGCTTTTCTATGGAGATCTGTGACGCGTGCACGCGGACTAGCACATGATCAAAAAGTTAGTTGTAAGTTTGCCATAAACAATAGACCAAGAATCAAGCCACCTCTCCTACAAGAGTACTTTGGAAACTCGGTTGATGTGGTGAGTACCGAAACAACCGTAGGGAAATTGCTTGAGAATGATCTGGGATGGGCGGCATGGAAGGTGCATACACTTGTTGTGAATCATGATGACAGAGAGGCGAGAGAGATGATTGGAAAGTGGTTAGAGTCTCCTATTGTCTATCAACTTGGTCGCCACTTTGATCCTTTCAGCGTGGTGATGTCAAGTTCACCGAGATTCAATATGTATGGGAACGAATTTGGAATGGGAAAAGCGGTCGCAGTTCTAAGCGGCTATGCAAATAAATTTAATGGGAATGTGACAGCTTACGAGGGATACGAAGGAGGGGGAAGCATGGTTTTAGCAGTGTCTCTTTTGCCTGATGCAATGCGTGCGCTAGAATTAGACGACAATTTTATGAATGTAGTTTCTGTGGCCAATTTCGACAAAGCATCCTTAAAATAA 1392 0.4052 MMSSSAVQHVSECFIKPLFPIQESKQICYLTTWDIAMLSMHYIQKGLLFKKPPTPNNHQDFIHNFLENLKQSISLALFHFYPLSGRLVTQKTQEPPSYSVFVDCSNDNPGARFIYGTLDATIYDILSPVDHPPVVDSLFDLDRAINHDGHTMPLLSIQVTELVDGVFVGCSMNHCIGDGTSFWNFFNVWSEIFQAREKGRDVVMSRQPFHNRWFLEGCGPLINLPFKHHDEFTSRFEAPKLRERFFHFSAESIAKLKAKANEEANTNEISSFQSLSAFLWRSVTRARGLAHDQKVSCKFAINNRPRIKPPLLQEYFGNSVDVVSTETTVGKLLENDLGWAAWKVHTLVVNHDDREAREMIGKWLESPIVYQLGRHFDPFSVVMSSSPRFNMYGNEFGMGKAVAVLSGYANKFNGNVTAYEGYEGGGSMVLAVSLLPDAMRALELDDNFMNVVSVANFDKASLK 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05023 463 Gene3D - 227 444 IPR023213 -
Trre6g05023 463 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 450 - -
Trre6g05023 463 Pfam Transferase family 9 446 - -
Trre6g05023 463 Gene3D - 2 219 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05023 Trre-Chr6 52777400 52778791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05023 69 443 Monolignol Biosynthesis Gene Families AT5G48930 27.595 1.46e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05023 - - lja:Lj1g3v1664450.1 665.225