Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05021 ATGATGAATACCCCGAAAGGCCTTTTATTCAAAAAACCAAATAACCAACAAGATTTCGTCGAAAATCTATTGGAGAAGCTCAAACACTCACTCTCTATAGCGCTATTCCATTTCTATCCTCTGTCTGGTCGCGTCGTTACACAAAAATCTCAAGACCCTCCCTCTTATGTTATTTTCGTTGATTGCAGTAACAATAACCCGGGAGCTAAATTTATCTACACAACTTTGGATATGACCGTATCTGATATCCTTACCCCGACAGATGTTCCGCAGATTGTTAAGTCGTTGTTTGATCTCGATAAAGCAATCAATCACGACGGTCACACTGTGCCCTTGTTATCTATACAAGTCACTGAGCTAGTGGACGGTGTTTTCGTAGGTTGTTCCATGAATCATTATATTGGTGATGGAACTTCTTATTGGAATTTTTTTAATATATGGTCTGAAATATTTCAAGCTCAAGACCAAGGGCGCGATGTTCCCATTTCGCGTGAACCCTTGCACAATCGTTGGTTTCCAGAAGGTTATGGTCCACTAATCAATCTTCCATTCAAACATCATGACGAGTTTATAAGTAGATATGAAGCGCCCGAGTTGGTAGAGAGATTCTTCCACTTTACAGCAGAGTCTATTGCGAAATTGAAAGCAAAGGCCAATATCGAGTCTAATACAAACAAAATCTCTTCGTTCCAATCCTTAACTGCACATGTTTGGAGATGTATAACTCGTGCTCGCGGCATATCAAATGATCAAATAACAACTTGTATGTTAGCTGTTAACAATCGTCCGAGAATAAAACCATCTCTTCCGGATGAGTACTTTGGGACCTCAATTGATACGGTAGCTACACAAGTGACCGTAGGAGAATTGCTTGAGAATGATTTAGGATGGGCAGCATTGAAGGTGCATGTTGCTATTGCAAACCATAACGACCTAGAAGTGCGAAAGATAGTCAAAAAGTGGTTAGAATCTCCGACTATATTCAGCCTTAACCGCCACTTACATCCCTTTAGTGTCGCGATGATAAGTTCACCGAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAACCAGTGGCAGTTCTTAGTGGTAATGCAAACAAATGTGATGGTAATGTGACATCATACGAGGGGCGCGAAGGAGAGGGGAGCATAGATTTTGAAATTTCTTTGTCTATAAATGCAATGAGAGCACTCGAATCGGACGATAATTTCATGAATGCAGCTTCAGTGACCAATCCCTCTAATTAA 1254 0.4043 MMNTPKGLLFKKPNNQQDFVENLLEKLKHSLSIALFHFYPLSGRVVTQKSQDPPSYVIFVDCSNNNPGAKFIYTTLDMTVSDILTPTDVPQIVKSLFDLDKAINHDGHTVPLLSIQVTELVDGVFVGCSMNHYIGDGTSYWNFFNIWSEIFQAQDQGRDVPISREPLHNRWFPEGYGPLINLPFKHHDEFISRYEAPELVERFFHFTAESIAKLKAKANIESNTNKISSFQSLTAHVWRCITRARGISNDQITTCMLAVNNRPRIKPSLPDEYFGTSIDTVATQVTVGELLENDLGWAALKVHVAIANHNDLEVRKIVKKWLESPTIFSLNRHLHPFSVAMISSPRFNMYGNEFGMGKPVAVLSGNANKCDGNVTSYEGREGEGSIDFEISLSINAMRALESDDNFMNAASVTNPSN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05021 417 Gene3D - 188 402 IPR023213 -
Trre6g05021 417 Gene3D - 1 178 IPR023213 -
Trre6g05021 417 Pfam Transferase family 6 406 - -
Trre6g05021 417 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 408 - -
Trre6g05021 417 FunFam Tryptamine hydroxycinnamoyl transferase 185 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05021 Trre-Chr6 52773555 52774925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05021 10 401 Monolignol Biosynthesis Gene Families AT5G48930 28.224 7.28e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05021 - - lja:Lj1g3v1664450.1 590.497