Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05019 ATGTCTCTTCTACTAGACAACTGTGAAGGCATTTTACTCTCACTAGATTCCCACAAATCAGTCCCAGCTCCATTCCTCACCAAAACATACCAACTCGTCGATGATCCTTCCACAGATCACATCGTCTCTTGGGGTGAAGATGACTCCACCTTCGTCGTCTGGCGTCCTCCTGAATTCGCTAGAGACCTCCTCCCTAACTACTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGGAAGATTGTACCTGATAGATGGGAGTTTGCAAATGAATATTTCAAAAAAGGTGAAAAACATTTACTTTGTGAGATTCATAGAAGAAAAACAACACAGCCACAACAAACAGGAATCAACAACATGAATCATCATCATCATCTTCACCATCAGCATCAAAATGTTCCACCAAGTTTCTTTCCATTTTCAAACACTACTAGAGTAAGCATTTCTCCACCAAATGATCATCATTACTCTTCTGATGAACATCTCAACAATTGGTCTTGTGATTCTCCACCTTTAACTTCTCCGTCATTCGTCAACGGAGCACCAACAACAGCAGCAACAAACAACTACAATACTTCTGTTACTGCTCTTTCTGAAGATAATGAAAGATTAAGAAGAAGTAACAACATGTTAATGTCTGAGTTGGCTCATATGAAGAAGCTTTACAATGATATAATATATTTTGTTCAGAATCATGTTAAACCCGTCGCTCCGAGTAATACTTACTCTTCTTCATTTTTACTACCACAAGCTTCTTCAAATCCTATGAATGCTGGTGGTGGTGGTGGTAATGTTTCAATGGTGCAAAGGCCAATGAATAATCATAATCAGCTTTTGGGATATTATTGTAATAATAATAACAATAATAGCCCTAAAAATGTTACTCAGTTTCAAGCACAAAATCAATCTCATCATCATGGTGTGAATAGGAATGTGAATGTTAACTCTCCAACAAATACATCAAGAAGCTCTATTACAATGGTTGAAGGGCATAACAGTAATAACAGCAGCAAGACTAAGCTTTTTGGAGTATCACTACAGTCCAACAAGAAAAGAGTGCACCCTGAATGTGGATCTAATAATCCAAATAATTTGGAAACCAACAAAGCTCGTTTGGTTTTGGATCAAAAAGATCATGATTTTGATTTGGGTTTGAATCTCATGCCTCCTTCTGCTTGTTAG 1203 0.3782 MSLLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEYFKKGEKHLLCEIHRRKTTQPQQTGINNMNHHHHLHHQHQNVPPSFFPFSNTTRVSISPPNDHHYSSDEHLNNWSCDSPPLTSPSFVNGAPTTAATNNYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYSSSFLLPQASSNPMNAGGGGGNVSMVQRPMNNHNQLLGYYCNNNNNNSPKNVTQFQAQNQSHHHGVNRNVNVNSPTNTSRSSITMVEGHNSNNSSKTKLFGVSLQSNKKRVHPECGSNNPNNLETNKARLVLDQKDHDFDLGLNLMPPSAC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05019 400 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05019 400 Gene3D - 17 116 IPR036388 -
Trre6g05019 400 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Trre6g05019 400 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05019 400 FunFam Heat stress transcription factor B-4 17 115 - -
Trre6g05019 400 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 333 IPR027725 -
Trre6g05019 400 Coils Coil 201 221 - -
Trre6g05019 400 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05019 400 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05019 400 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre6g05019 400 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05019 Trre-Chr6 52735534 52736849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05019 9 395 HSF AT1G46264 54.660 3.12e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre6g05019 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05019 K09419 - gmx:100781389 499.975