Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05018 ATGGACTCTAACCACTTAAAACCATCCTCCTCATCATCATCAGAAGATCAGATTGATATGATGTTGATGATGATGATGCAACTTCCTGAACTTTCTTCATCTAACGGTAATAACACCATCAATGAATTTCCACCGTCAGATCAAGAACTTTATGGTTCTAGTTCTACTAATACACGTCCTCTTGCAGATTTAATTGATAAGTACCCTACTAATTCAATTCCTAATTGGTCTTCAACTTTACCCTCACAATCCACAAACACAATCACTTTTAGTAATAACAACATGTTTCAACAACTACAACAAACAACACCACCACCAACGTTAATGTTTTCGAATTCGAACAACGATGTTGTTACGAATACGAATCATTACGCTGGTGGTGGTGGTGGTGCAGCGTCGTCATCAGAGAAACGAAACTCGATGGCAGCGATGAGGGAAATGATATTCAGAATAGCAGCTATGCAACCAATTTACATTGATCCAGAATCAGTAAAACCACCAAAGAGAAGAAACGTGAAGATTTCAAAAGATCCACAGAGTATAGCAGCTAGACATAGAAGAGAAAGAATAAGTGAGAAAATAAGGATTCTACAGAGAATGGTACCAGGTGGAACTAAAATGGATACTGCATCAATGTTAGATGAAGCTGTTCATTATGTTAAGTTTCTTAAGACACAACTTAAGTCGCTTCAAGAACGTGCTTCTGTAGCTAACAATAACAGAACAGTTGCAGGTTCAGGAATAGGGTTCCCTGTTTCATTGGCTAAGCCTTATCAAGGTCGTAATGTTGATCATTATGCATGA 804 0.3794 MDSNHLKPSSSSSSEDQIDMMLMMMMQLPELSSSNGNNTINEFPPSDQELYGSSSTNTRPLADLIDKYPTNSIPNWSSTLPSQSTNTITFSNNNMFQQLQQTTPPPTLMFSNSNNDVVTNTNHYAGGGGGAASSSEKRNSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAVHYVKFLKTQLKSLQERASVANNNRTVAGSGIGFPVSLAKPYQGRNVDHYA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05018 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Trre6g05018 267 Pfam Helix-loop-helix DNA-binding domain 181 223 IPR011598 GO:0046983
Trre6g05018 267 Coils Coil 213 240 - -
Trre6g05018 267 SMART finulus 180 229 IPR011598 GO:0046983
Trre6g05018 267 CDD bHLH_AtIND_like 175 233 - -
Trre6g05018 267 Gene3D - 173 243 IPR036638 GO:0046983
Trre6g05018 267 MobiDBLite consensus disorder prediction 31 58 - -
Trre6g05018 267 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 239 IPR045843 GO:0003700|GO:0006355
Trre6g05018 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 234 IPR036638 GO:0046983
Trre6g05018 267 FunFam BHLH transcription factor 177 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05018 Trre-Chr6 52700033 52700836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05018 129 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 72.269 6.82e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g05018 HLH 9.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05018 - - tpra:123913324 409.838