Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05016 ATGAATTTCAAGGGTTTTGGGAATGATCCGGGAGCGTCGGCCGCCGCAGCTGGTGGTGGAATTGGGAGGACACCGCCGGGGAATTTTCCGCTTGCGCGGCAACCGTCGGTTTATTCTTTGACGGTTGATGAATTTATGAACAGTATGGGTGGTTCTGGGAAAGATTTTGGGTCAATGAATATGGATGAATTGTTGAAGAATATTTGGACTGCAGAAGAGGTTCAAACAATGGGTGGTGAAGATGCTATTAATCAGTTGCAAAGACAGGGTTCGTTGACGCTGCCGAGAACTCTTAGTCAGAAAACAGTTGATGAAGTTTGGAAGGATATTTCAAAGGATTATGGTCCTAATTTGGCTGCACCACAGGCTCAGAGACAGCCAACTTTGGGAGAAATGACTTTGGAAGAGTTTCTGGTTAGAGCTGGTGTTGTTAGGGAAGATGCTAAACCTAATGATGGAGTTTTTCTTGATCTTGCTCGTGTCGGAAATAATGGTAATTTGGGTTTGGGTTTCCAGCCTCAGCAGATGAATAAAGTTGGTGGTTTTATGGGGAATAATAGATTGAATGGTAATGATGATCCACTTGTTGGTGGTCTTCAGAGTCCTACGAATTTGCCGTTGAATGTTAATGGGATTCGATCAACGAATCAACAACAGATGCAGAATTCACAGTCTCAGCAACAACACCAGAATCAACAACTTCAGCAACTTCAACAACAACATCAACAGCAACAACAGCAGCAGCAGCAGATTTTTCCGAAGCAACCTGGTTTGAACTATGCAACTCAGATGCCTCTGACTAGTAATCAAGGAATGAGAGGTGGGATTGTGGGGCTTTCTCCTGATCAAGGAATGAATGGTAATCTTGTGCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCACCCGGGGCTGTTCAAATTGGTGCTGGATCACCGGCGAACCAGCTATCTAGTGATCAAATGGGAAAGAGTAACGGTGATACTTCTTCTGTGTCACCGGTTCCTTATGTTTTTAATGGTGGTATGCGAGGTAGGAAGGGTAATGGAGCTGTGGAGAAGGTAATTGAGAGGAGGCAGAGAAGAATGATCAAGAACAGGGAGTCAGCTGCTAGATCTCGGGCTCGCAAGCAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCAAAGTTAAAAGAAGAGAATGAAGAACTTCAGAAAAAGCAGGAGCAAATCATGGAAATTCAGAAAAATCAAGTTAAGGAAATGATGAATTTGCAGCGAGAAGTCAAGAGAAAATGCTTAAGACGAACACAAACTGGTCCGTGGTAG 1308 0.4411 MNFKGFGNDPGASAAAAGGGIGRTPPGNFPLARQPSVYSLTVDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMGGEDAINQLQRQGSLTLPRTLSQKTVDEVWKDISKDYGPNLAAPQAQRQPTLGEMTLEEFLVRAGVVREDAKPNDGVFLDLARVGNNGNLGLGFQPQQMNKVGGFMGNNRLNGNDDPLVGGLQSPTNLPLNVNGIRSTNQQQMQNSQSQQQHQNQQLQQLQQQHQQQQQQQQQIFPKQPGLNYATQMPLTSNQGMRGGIVGLSPDQGMNGNLVQGGGIGMVGLAPGAVQIGAGSPANQLSSDQMGKSNGDTSSVSPVPYVFNGGMRGRKGNGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKKQEQIMEIQKNQVKEMMNLQREVKRKCLRRTQTGPW 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05016 435 CDD bZIP_plant_BZIP46 357 411 - -
Trre6g05016 435 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 31 435 IPR043452 GO:0003700|GO:0045893
Trre6g05016 435 MobiDBLite consensus disorder prediction 216 251 - -
Trre6g05016 435 Coils Coil 220 251 - -
Trre6g05016 435 SUPERFAMILY Leucine zipper domain 357 406 IPR046347 GO:0003700|GO:0006355
Trre6g05016 435 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 360 375 IPR004827 GO:0003700|GO:0006355
Trre6g05016 435 Gene3D - 355 424 - -
Trre6g05016 435 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 355 406 IPR004827 GO:0003700|GO:0006355
Trre6g05016 435 MobiDBLite consensus disorder prediction 311 331 - -
Trre6g05016 435 Coils Coil 373 425 - -
Trre6g05016 435 Pfam bZIP transcription factor 357 408 IPR004827 GO:0003700|GO:0006355
Trre6g05016 435 SMART brlzneu 353 418 IPR004827 GO:0003700|GO:0006355
Trre6g05016 435 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 355 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05016 Trre-Chr6 52678151 52681867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05016 29 435 bZIP Transcription Factor Family AT3G19290 46.925 1.48e-92 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g05016 bZIP_1 2.8e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05016 K14432 - gmx:100819313 512.301