Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05009 ATGGTTGCACTTACAGCAATAGCAAGAAGCTTCCATTTTCAGCAACACTCTTTAATCAACAGCAATACCATTGGTAAATCTTCAACAGCACGACACAACTGGCTAAGGCCCGCTGCTACAGGAACAGGAGTCACTCGACGTTATAGGCAAATTTGTGTAGCGGCTCAACAGCGACCGACATGGCTCCCAGGACTTGATTCCCCAACTTATCTTGATGGAACTCTGCCAGGAGATTTTGGGTTCGACCCACTTGGGCTCGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTGCAAGCAGAGTTGGTTCATTGTCGCTTTGCTATGCTTGGGATCTTTGGAATTCTAGTCACAGATCTACTTCGCGTCGCAGGAGTTAGTAACATACCAGTTTGGTTTGAAGCTGGTGCAGTAAAATACGAGTTTGCAAACACAGGGACGCTCATCGTTGTTCAACTACTCTTGATGGGGTATGCCGAAACAAAAAGGTACATGGATTTTGTTAGTCCTGGATCTCAAGCTAAAGAGGGTTCCTTCTTTGGATTGGAAGCTTCATTTGGTGGTCTAGAGCCAGGGTATCCTGGAGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAATGCTCATGACTGGAAGCTTAAAGAGATCAAGAATGGGCGACTTGCAATGGTGGCAATACTTGGCATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCTATTGATAACCTTGTTGAGCATCTCTCAAATCCATGGCATAAAACTATTATTCAGACCCTTGCAAGTTCTAGTTCTTAG 804 0.4478 MVALTAIARSFHFQQHSLINSNTIGKSSTARHNWLRPAATGTGVTRRYRQICVAAQQRPTWLPGLDSPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHCRFAMLGIFGILVTDLLRVAGVSNIPVWFEAGAVKYEFANTGTLIVVQLLLMGYAETKRYMDFVSPGSQAKEGSFFGLEASFGGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASSSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05009 267 FunFam Chlorophyll a-b binding protein, chloroplastic 59 266 - -
Trre6g05009 267 SUPERFAMILY Chlorophyll a-b binding protein 53 264 - -
Trre6g05009 267 Gene3D Chlorophyll a/b binding protein domain 60 267 - -
Trre6g05009 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 50 262 IPR001344 GO:0009765|GO:0016020
Trre6g05009 267 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05009 Trre-Chr6 52615130 52616682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05009 50 262 Chloroplast and Mitochondria Gene Families AT3G61470 47.196 4.35e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05009 K08911 - gmx:100804934 407.142