Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04995 ATGTCTGGTCGGAATGAACATGTTCCTCTTTCGGTGCTGTTGAAACGTGAATTGGCGAATGAGAAAATTGACAAATCTGATATGGTTGTTGTGTATAGCCAAGCTAGCGAGAATAAAAAAGGAGAGGATTTTACGTTGTTGAAGACTGAATGTCAAAGAGTTGTGGCTGATGGGGTTTCTACCTATTCTGTTTTTGGGCTATTTGATGGACACAATGGATCTGCTGCTGCAATTTATGCCAGAGAGAATCTTCTGAACAATGTTTTAAATGCCATTCCTCCAGATCTCAACAGAGATGAGTGGGTAACAGCGTTGCCGAGGGCTTTGGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAACAGAAAGCACAAACATCGGGAACAACTGTAACCCTTGTGATTTTAGAAGGATGGGTTATAACAGTTGCATCAGTTGGTGATTCCCGGTGCATACTTGAACCTTCTGAAGGTGGGCTTCATTACTTGTCAGCAGATCATAGACTAGACACAAATGAAGAGGAGAGGGTGCGCATCACTTCTTGTGGGGGTGAAGTCGGTCGGTTAAATACAGGCGGAGGTGCAGAGGTTGGTCCGTTGAGATGTTGGCCCGGTGGCTTGTGTCTCTCTCGATCCATTGGTGATATGGATGTTGGCGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCCACTTCTGGAGGAAGGCTTATCATTAGTAGTGATGGGGTCTGGGATGCTCTAACTGCAGAAATGGTCCTTGATTGTTGTCGTGGCATGTCAGCGGAGGCTGCAGCCCCACATATTGTAAAAGAATCTTTGCATGCAAAGGGACTTAGAGATGACACAACCTGCATTGTGGTCGATATTTTACCCCAGGAGAAGCCACCTACTTCTCTACCAACACAAAAGAGACCGGTAAAAGGAATGTTGAAGGCCATTTTTCGCAAAAAGTCCTCTGAGCCATCTTCATATATTGTAAGAGAATACGTTGAGCCAGATATGGTACGGGAATTACACGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTTGAAACAAAATTTCCACTTTGCAACATGTTCAAGTTGTTCCAGTGTGCAGTGTGTCAAGTAGAGATTAAACCTGGGGAGGGTATTTCAGTACATGAGGGTGCCCCTAACCAAGGGAAAGCGCGCCCCTGGGATGGACCTTTCCTTTGCTCAAGTTGCCACGAGAAGAAACAAGCCATGGAAGGGAGACGAACATCAGATAGACATAGCCGTCGAAGTGACTAA 1284 0.4494 MSGRNEHVPLSVLLKRELANEKIDKSDMVVVYSQASENKKGEDFTLLKTECQRVVADGVSTYSVFGLFDGHNGSAAAIYARENLLNNVLNAIPPDLNRDEWVTALPRALVAGFVKTDKDFQQKAQTSGTTVTLVILEGWVITVASVGDSRCILEPSEGGLHYLSADHRLDTNEEERVRITSCGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTSGGRLIISSDGVWDALTAEMVLDCCRGMSAEAAAPHIVKESLHAKGLRDDTTCIVVDILPQEKPPTSLPTQKRPVKGMLKAIFRKKSSEPSSYIVREYVEPDMVRELHEEGSAMLSERFETKFPLCNMFKLFQCAVCQVEIKPGEGISVHEGAPNQGKARPWDGPFLCSSCHEKKQAMEGRRTSDRHSRRSD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04995 427 CDD PP2Cc 31 293 IPR001932 -
Trre6g04995 427 ProSiteProfiles PPM-type phosphatase domain profile. 32 293 IPR001932 -
Trre6g04995 427 FunFam probable protein phosphatase 2C 12 32 299 - -
Trre6g04995 427 SUPERFAMILY PP2C-like 30 293 IPR036457 -
Trre6g04995 427 SMART PP2C_4 19 291 IPR001932 -
Trre6g04995 427 MobiDBLite consensus disorder prediction 409 427 - -
Trre6g04995 427 MobiDBLite consensus disorder prediction 408 427 - -
Trre6g04995 427 Gene3D - 21 299 IPR036457 -
Trre6g04995 427 Pfam Protein phosphatase 2C 57 281 IPR001932 -
Trre6g04995 427 PANTHER PROTEIN PHOSPHATASE 42 292 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04995 Trre-Chr6 52522703 52526910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04995 1 427 PP2C-type Phosphatase Gene Family AT1G47380 73.953 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04995 - - tpra:123914399 809.29