Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04993 ATGGTGGCAGCAGCAACATCAGCATCATCCTACGAAGAGAGTCGCCGTAAAAGAATGGAAGAAAACAGAAAGAGAATGGAAGCTCTCAATCTTCATCAACTTTCTCATTCTCTTCACAAATCATCTTCCCCCGTTTCAAAACCCTCCCCTTCCAAACCTCGCACCATCACCAAAGAGCTCGTTGTTGTTCGACGCTCCGGCCGTGTCGCAAATTTACCCGCTCCCATTTACAAAGAAGTTCTTATTGATCGCGTCATAATACCTAGAAATCGAACTTCTAGAGGAGGTTATAATAAGTACAGGGATTATTCGAAGCGAGTGTATGCTTCTGATGAAGCTAGAGAGGAAGCATTGGAAAAGGCGGAAAAGTTGCAATCTGATTTAGATTCCGATCATCCGATTTTTATTAAGACAATGCTTCAATCTCATGTTACTGGTGGATTCTGGCTGGGCCTTCCAGTTCATTTCTGCAAGAAACACCTTCCAAAACAGGATGAAGCTATGACTTTGATTGACGAGGAGGGGGAGGAGTATCCAACTACATATTTGGCTCAAAAAACAGGACTTAGTGCTGGATGGAGAGGTTTTTCTATTGCTCATAACCTTGTTGACGGGGACGCTTTAATTTTTGAATTAGTTAAACGCACTGCATTCAAGGTGTACATTATTAGAGTGAATGGTCCTTCGGAAGGTAAAGAGCTCGAGTGA 708 0.428 MVAAATSASSYEESRRKRMEENRKRMEALNLHQLSHSLHKSSSPVSKPSPSKPRTITKELVVVRRSGRVANLPAPIYKEVLIDRVIIPRNRTSRGGYNKYRDYSKRVYASDEAREEALEKAEKLQSDLDSDHPIFIKTMLQSHVTGGFWLGLPVHFCKKHLPKQDEAMTLIDEEGEEYPTTYLAQKTGLSAGWRGFSIAHNLVDGDALIFELVKRTAFKVYIIRVNGPSEGKELE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04993 235 ProSiteProfiles B3 DNA-binding domain profile. 135 226 IPR003340 GO:0003677
Trre6g04993 235 MobiDBLite consensus disorder prediction 11 30 - -
Trre6g04993 235 Gene3D - 109 227 IPR015300 -
Trre6g04993 235 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 226 IPR044837 -
Trre6g04993 235 MobiDBLite consensus disorder prediction 1 54 - -
Trre6g04993 235 Pfam B3 DNA binding domain 135 224 IPR003340 GO:0003677
Trre6g04993 235 CDD B3_DNA 133 224 IPR003340 GO:0003677
Trre6g04993 235 SUPERFAMILY DNA-binding pseudobarrel domain 128 226 IPR015300 -
Trre6g04993 235 SMART B3_2 135 226 IPR003340 GO:0003677
Trre6g04993 235 MobiDBLite consensus disorder prediction 34 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04993 Trre-Chr6 52511163 52514535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04993 10 234 B3 DNA Binding Superfamily AT3G19184 55.794 2.63e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g04993 B3 3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04993 - - gmx:100797091 291.582