Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04966 ATGCAATCATCAAACGGTGGTAATTCTGATTCCAAACCAACTGAACAGAGGTTAAACAAAACGCCGCCGCATTCAGTTACTTTACCACCACATCAACAGTGGATTCCGATGCAATATCCAGCGGCGGCAATGGTAATGCCACATCATATGTTACCGCCTCAACATTATCCGCCGCCGCCGCATCATTATATGCCTTATCATTATCATCAACAACAACAACACGTGCCTCACGTGCATCATGGATCTAGTGCTGATAATAAGACCATCTGGGTCGGTGATTTGCATCATTGGATGGATGAAAATTATCTTCACCGTTGTTTCGCTTCCACTGGCGAGATTTGCTCGATTAAGGTTATTCGGAATAAGCAGACTGGTCAAACGGAGGGTTATGGATTTGTGGAATTCCATTCGCATGGGACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATGTTGATGCCTAACACAGAGCAACTTTTCCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTTCCTGATCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCTTGAAACTTTTTCTAATAGATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCAAAGGCTATGAATGAAATGAATGGTGTTTTCTGTTCTAGCAGGCCTATGCGAATTGGTGCTGCAACTCCGAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACACCAAGCCAATCTGAAGCTGATTCTACAAATACAACTATATTTGTGGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTCAGACAACCATTCTCCCAGTATGGATGTGGTTTTGTACAATTTGGAAACAGAAATAACGCTGAAGAGGCATTGCAGAAGCTAAATGGTACGACAATTGGCAAGCAAACAGTCCGTCTTTCTTGGGGTCGCAATCCAGCAAATAAGCAGTTTAGGACGGATTTCAGCAGTCCTTGGAATTCTCCGGCGTATTATGGAGGAGCTGTTTATGATGGTTATGGATATGCTTTACTGCATCCACATGACCCGAGCATGTATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGACACCAACAACAAGTAAGCTAA 1218 0.4368 MQSSNGGNSDSKPTEQRLNKTPPHSVTLPPHQQWIPMQYPAAAMVMPHHMLPPQHYPPPPHHYMPYHYHQQQQHVPHVHHGSSADNKTIWVGDLHHWMDENYLHRCFASTGEICSIKVIRNKQTGQTEGYGFVEFHSHGTAEKVLQNYAGMLMPNTEQLFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDSMLLETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKAMNEMNGVFCSSRPMRIGAATPRKSSGYQQGGQSNGTPSQSEADSTNTTIFVGGLDPSATAEDLRQPFSQYGCGFVQFGNRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRTDFSSPWNSPAYYGGAVYDGYGYALLHPHDPSMYAAAYGAYPIYGGHQQQVS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04966 405 FunFam Polyadenylate-binding protein RBP47B 168 271 - -
Trre6g04966 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 77 350 - -
Trre6g04966 405 MobiDBLite consensus disorder prediction 257 290 - -
Trre6g04966 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Trre6g04966 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Trre6g04966 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 339 IPR000504 GO:0003723
Trre6g04966 405 FunFam Polyadenylate-binding protein RBP47B 86 166 - -
Trre6g04966 405 SMART rrm1_1 287 342 IPR000504 GO:0003723
Trre6g04966 405 SMART rrm1_1 88 163 IPR000504 GO:0003723
Trre6g04966 405 SMART rrm1_1 182 256 IPR000504 GO:0003723
Trre6g04966 405 CDD RRM1_SECp43_like 88 168 - -
Trre6g04966 405 MobiDBLite consensus disorder prediction 1 32 - -
Trre6g04966 405 Gene3D - 86 166 IPR012677 -
Trre6g04966 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 167 IPR000504 GO:0003723
Trre6g04966 405 CDD RRM2_SECp43_like 180 259 - -
Trre6g04966 405 Gene3D - 311 355 IPR012677 -
Trre6g04966 405 Gene3D - 167 273 IPR012677 -
Trre6g04966 405 SUPERFAMILY RNA-binding domain, RBD 47 167 IPR035979 GO:0003676
Trre6g04966 405 MobiDBLite consensus disorder prediction 261 290 - -
Trre6g04966 405 Gene3D - 274 310 IPR012677 -
Trre6g04966 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 346 IPR000504 GO:0003723
Trre6g04966 405 SUPERFAMILY RNA-binding domain, RBD 180 348 IPR035979 GO:0003676
Trre6g04966 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04966 Trre-Chr6 52292177 52295352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04966 89 351 Eukaryotic Initiation Factors Gene Family AT1G71770 26.596 1.05e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04966 - - gmx:100785454 601.668