Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04965 ATGCAATCATCAAACGGTGGTAATTCTGATTCCAAACCAACTGAACAGAGGTTAAACAAAACGCCGCCGCATTCAGTTACTTTACCACCACATCAACAGTGGATTCCGATGCAATATCCAGCGGCGGCAATGGTAATGCCACATCATATGTTACCGCCTCAACATTATCCGCCGCCGCCGCATCATTATATGCCTTATCATTATCATCAACAACAACAACACGTGCCTCACGTGCATCATGGATCTAGTGCTGATAATAAGACCATCTGGGTCGGTGATTTGCATCATTGGATGGATGAAAATTATCTTCACCGTTGTTTCGCTTCCACTGGCGAGATTTGCTCGATTAAGGTTATTCGGAATAAGCAGACTGGTCAAACGGAGGGTTATGGATTTGTGGAATTCCATTCGCATGGGACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATGTTGATGCCTAACACAGAGCAACTTTTCCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTTCCTGATCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCTTGAAACTTTTTCTAATAGATATCCTTCTGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCAAAGGCTATGAATGAAATGAATGGTGTTTTCTGTTCTAGCAGGCCTATGCGAATTGGTGCTGCAACTCCGAGGAAATCCTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACACCAAGCCAATCTGAAGCTGATTCTACAAATACAACTATATTTGTGGGAGGACTTGACCCTATCTCTGTTAAGATCCCTGTCGGAAAAGGATGTGGTTTTGTACAATTTGGAAACAGAAATAACGCTGAAGAGGCATTGCAGAAGCTAAATGGTACGACAATTGGCAAGCAAACAGTCCGTCTTTCTTGGGGTCGCAATCCAGCAAATAAGCAGTTTAGGACGGATTTCAGCAGTCCTTGGAATTCTCCGGCGTATTATGGAGGAGCTGTTTATGATGGTTATGGATATGCTTTACTGCATCCACATGACCCGAGCATGTATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGACACCAACAACAAGTAAGCTAA 1203 0.4356 MQSSNGGNSDSKPTEQRLNKTPPHSVTLPPHQQWIPMQYPAAAMVMPHHMLPPQHYPPPPHHYMPYHYHQQQQHVPHVHHGSSADNKTIWVGDLHHWMDENYLHRCFASTGEICSIKVIRNKQTGQTEGYGFVEFHSHGTAEKVLQNYAGMLMPNTEQLFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDSMLLETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKAMNEMNGVFCSSRPMRIGAATPRKSSGYQQGGQSNGTPSQSEADSTNTTIFVGGLDPISVKIPVGKGCGFVQFGNRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRTDFSSPWNSPAYYGGAVYDGYGYALLHPHDPSMYAAAYGAYPIYGGHQQQVS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04965 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 77 345 - -
Trre6g04965 400 Gene3D - 295 347 IPR012677 -
Trre6g04965 400 SMART rrm1_1 287 337 IPR000504 GO:0003723
Trre6g04965 400 SMART rrm1_1 88 163 IPR000504 GO:0003723
Trre6g04965 400 SMART rrm1_1 182 256 IPR000504 GO:0003723
Trre6g04965 400 Gene3D - 86 166 IPR012677 -
Trre6g04965 400 MobiDBLite consensus disorder prediction 257 285 - -
Trre6g04965 400 CDD RRM1_SECp43_like 88 168 - -
Trre6g04965 400 MobiDBLite consensus disorder prediction 1 32 - -
Trre6g04965 400 SUPERFAMILY RNA-binding domain, RBD 47 167 IPR035979 GO:0003676
Trre6g04965 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 341 IPR000504 GO:0003723
Trre6g04965 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 167 IPR000504 GO:0003723
Trre6g04965 400 CDD RRM2_SECp43_like 180 259 - -
Trre6g04965 400 MobiDBLite consensus disorder prediction 261 285 - -
Trre6g04965 400 FunFam Polyadenylate-binding protein RBP47B 168 271 - -
Trre6g04965 400 FunFam Polyadenylate-binding protein RBP47B 86 166 - -
Trre6g04965 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Trre6g04965 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 334 IPR000504 GO:0003723
Trre6g04965 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Trre6g04965 400 SUPERFAMILY RNA-binding domain, RBD 180 343 IPR035979 GO:0003676
Trre6g04965 400 Gene3D - 167 276 IPR012677 -
Trre6g04965 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04965 Trre-Chr6 52292177 52295352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04965 89 348 Eukaryotic Initiation Factors Gene Family AT4G34110 26.573 8.13e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04965 - - gmx:100785454 592.423