Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04958 ATGAATAGAAGCTCTTCAACAACAACATCATCATCAGATTCATGTTCATCAGAATCAAATCGAACGAACCAAAACAAATTAGACAAAATCAAAGGTCCATGGAGTGCAGAAGAAGATAGAATCCTAACCCGACTCGTTGAACAACATGGAGCAAGAAACTGGTCACTCATCAGCCGTTACATAAAAGGAAGGTCCGGAAAATCCTGCAGACTCCGATGGTGTAATCAACTCAGTCCAACGGTGGAGCACCGTCCATTCTCGCCGGAAGAAGATGAAACAATCATAGCGGCGCATACTCAATACGGTAACCGTTGGGCTACCATTGCTCGTCTTTTACCTGGAAGAACTGATAATGCTGTGAAGAATCATTGGAATTCGACGCTTAAACGAAGAGCCGGTTGTGGCGGTGGTCGCGGAATTGTTAGCGGCGGAAGTTGTTCTGCTCCGTTGGTTCAACCTTGTTTGGCGTTTGAAGATGATCCGTTGACCGCGTTGACTCTTGCTCCTCCCGGGAATGTTAATGATTATTGTGTGGAAGATCGGGAGGAGGCGGTTGCTGATCGTCGGTTTCCTTCGCCGTCGCCGTCGCCGGAAAGTGTTCCGACGGGGTTTTGGGATGTGATGAGAGGTGTTATTGCAAAAGAAGTTAGGGAATATGTTTCTTCTAATTTTGCTCATAATAATTCTGGTTTTCATTAA 699 0.4578 MNRSSSTTTSSSDSCSSESNRTNQNKLDKIKGPWSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPEEDETIIAAHTQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAGCGGGRGIVSGGSCSAPLVQPCLAFEDDPLTALTLAPPGNVNDYCVEDREEAVADRRFPSPSPSPESVPTGFWDVMRGVIAKEVREYVSSNFAHNNSGFH 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04958 232 SMART sant 30 79 IPR001005 -
Trre6g04958 232 SMART sant 82 130 IPR001005 -
Trre6g04958 232 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Trre6g04958 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 132 IPR017930 -
Trre6g04958 232 Gene3D - 30 82 - -
Trre6g04958 232 PANTHER MYB PROTEIN-RELATED 31 188 - -
Trre6g04958 232 Gene3D - 85 131 - -
Trre6g04958 232 MobiDBLite consensus disorder prediction 1 29 - -
Trre6g04958 232 FunFam MYB transcription factor 31 82 - -
Trre6g04958 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
Trre6g04958 232 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Trre6g04958 232 MobiDBLite consensus disorder prediction 1 31 - -
Trre6g04958 232 Pfam Myb-like DNA-binding domain 34 92 - -
Trre6g04958 232 CDD SANT 33 75 IPR001005 -
Trre6g04958 232 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Trre6g04958 232 CDD SANT 85 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04958 Trre-Chr6 52206468 52207166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04958 28 142 MYB Transcription Factor Family AT3G50060 73.043 1.79e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g04958 Myb_DNA-bind_6 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04958 - - vra:106761536 290.812