Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04950 ATGACTCCTACTAACCAAAGTAAGGGACAATTTATTCAGCAGCCCAAGCTTACCAGACAGAGGAGTTCATGGTACCCTAACGACCAACACCAAGCTGTTTCTCCTCAACCGGCTTCTCCTCTTCAAACTAGGTCCGGTCACTGGTCTCCTGATGTTTCTCCTCCACCGCTTCCATGTCCGGAATGGCCGTTGAATCGACGACCCGATCATCATGCTTCCTTACTCTTTTCCGGAAAGACTGTGGATCAAGATGCTGTGAAAAGTTTAAGATCTTCCAGCAGTTTAAGAAGACCCTCTCATGATAATGATTGTGAAGGTATTTCCAACACAAAATGGCAATTTGCTACCAAGAGTGCCCCAACAAGCATATTCTCCAGTCCTGTTACTAGTCCACACAGATTAAGTAGTGTAGATTTATTTGATTCTTCTAACAATTTTTCTCAAGATTTTAATGACATTTTGAGAAAGTATGCTAAAACTGCTCGCAGTCCAGACTTGTCTCCTCGTCATAGCTTGGGGAACCACAGTCCTATGTACCGCCACACTATTCAAGACTTCCCTCAAGATTTTAAGGACATGTTGAGATTGCCTGCTAAAACTCCTCATAGTCTAGACTTGTCTCCTAGTCGTAGCTTGGGGAACCACAGTCCTAACTATCGCCATAGTATTCAAGATTTTAATGGCGTGTTGAGATTGCCTACTAAAACTACTCGTAGTCCAGACTTGTCCCCTTCCCGTAGCTTGGGGAACGGTAGTCCTAACTACCGCCACATTATTCAAAATTTTCCTCAAGATTTTAATGATGTGTCGAGATTGCCTGCTAAAACTACTCGTAGTCCAGAGTTGTCTCCTCGTCGTAGCATGGGGAACAGCAGTCCTAACTACAGCCACGCAGTTCAAGATTTTAATGACATTTCGAGATTGCCTGCTAAAACTGCTCGTAGTCCTGACTTGTCTCCTCGCCATAGCTTGGGGAACCACAGTCCTAACCACCGCGACACTACTCAAGGGGGATCTCATACTCACCAATCTAAATATGGCACCAGAGTGGGACATGAAAATAACCATGCCGATGCATATCCATTGCCCCTTCCTCCGGGAGCTTCACTGCAACCACAACAACCACCTGAACAACATCAAACAAATGTCACATTGCATCACTCAACCAAAAATTTTCATTCAATGAAGGGTCAATGGCAGAAAGGAAGACTTATTGGACAAGGATCGTTAGGAAGTGTTTATATGGCAACAAACATAGAGACTGGAACGTCATGCGCAATGAAAGAGGTGGATCTATTTCCTGATGATCCTAAATCTGCTGACTGCATAAATCAGCTACACCAGCAAATCAGAATTCATGGTCAACTACACCACCCCAACATTGTTCAATATTATGGAAGTGAAATTGTTGGTGATCGATTGCGCATATATATGGAATATGTCCAACTTGGATCACTGAATAAGTTTATGCATGAACATTCCGGGGCTATGACAGAATCTGTGGTTCGCAATTTTACGAGGCATATTCTCTCTGGATTGGCTTACTTACATAGTACCAAGACTATCCATAGGGACATTAAATGTGCAAACTTGCTGGTTGATGCATCTGGCATTGTCAAGCTTGCAGGTTTTAGGATGTCAAAAATTCTGACTAAGAAATCAAGTGAACTATTGCTGAAAAGAAGTCCCTACTGGATGGCTCCAGAGTTCATGATGGTTGCCATGAAGAAAGCAACCAAACCCAACATTGCCATGGCTGTCGATATATGGTGCTTAGGATGCACCGTCATCGAGATGTTGACAGGAAAACCCCCTTGGGGCGAGTTTTCAGAGGTTCAAGCCACGTTCAAGGTACTGAACAGATCCCCAGACATACCGAAAACTTTATCTCCAGAAGGACATGATTTCCTTGAGCAGTGTTTCCGAAGGAATCCTTTAGATCGACCATCTGCAGCGATGCTTCTAACACATGCCTTTGTACAAATGAAGACACTGGACCCGAAGATGAATCACGTAGACATAGTCCAGGAGGCAGCTCAATAA 2043 0.4376 MTPTNQSKGQFIQQPKLTRQRSSWYPNDQHQAVSPQPASPLQTRSGHWSPDVSPPPLPCPEWPLNRRPDHHASLLFSGKTVDQDAVKSLRSSSSLRRPSHDNDCEGISNTKWQFATKSAPTSIFSSPVTSPHRLSSVDLFDSSNNFSQDFNDILRKYAKTARSPDLSPRHSLGNHSPMYRHTIQDFPQDFKDMLRLPAKTPHSLDLSPSRSLGNHSPNYRHSIQDFNGVLRLPTKTTRSPDLSPSRSLGNGSPNYRHIIQNFPQDFNDVSRLPAKTTRSPELSPRRSMGNSSPNYSHAVQDFNDISRLPAKTARSPDLSPRHSLGNHSPNHRDTTQGGSHTHQSKYGTRVGHENNHADAYPLPLPPGASLQPQQPPEQHQTNVTLHHSTKNFHSMKGQWQKGRLIGQGSLGSVYMATNIETGTSCAMKEVDLFPDDPKSADCINQLHQQIRIHGQLHHPNIVQYYGSEIVGDRLRIYMEYVQLGSLNKFMHEHSGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKCANLLVDASGIVKLAGFRMSKILTKKSSELLLKRSPYWMAPEFMMVAMKKATKPNIAMAVDIWCLGCTVIEMLTGKPPWGEFSEVQATFKVLNRSPDIPKTLSPEGHDFLEQCFRRNPLDRPSAAMLLTHAFVQMKTLDPKMNHVDIVQEAAQ 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04950 680 MobiDBLite consensus disorder prediction 319 345 - -
Trre6g04950 680 MobiDBLite consensus disorder prediction 311 381 - -
Trre6g04950 680 Pfam Protein kinase domain 400 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04950 680 MobiDBLite consensus disorder prediction 204 298 - -
Trre6g04950 680 MobiDBLite consensus disorder prediction 87 107 - -
Trre6g04950 680 ProSiteProfiles Protein kinase domain profile. 399 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04950 680 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 92 662 - -
Trre6g04950 680 MobiDBLite consensus disorder prediction 201 298 - -
Trre6g04950 680 Gene3D Transferase(Phosphotransferase) domain 1 396 679 - -
Trre6g04950 680 MobiDBLite consensus disorder prediction 1 49 - -
Trre6g04950 680 SMART serkin_6 399 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04950 680 SUPERFAMILY Protein kinase-like (PK-like) 382 663 IPR011009 -
Trre6g04950 680 MobiDBLite consensus disorder prediction 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04950 Trre-Chr6 52153562 52159840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04950 357 661 MAP Kinase Kinase Kinase AT5G66850 60.000 4.74e-130 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre6g04950 Pkinase 6.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04950 - - tpra:123916587 858.981