Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04949 ATGACTCCTACTGCTACGAACAAATCATCTTTCTCTTCTTCTTGTTCTTCGAATCAAGGTGGTAAAGGACAATCGATTCAGCAACGTAGACTTACTAGACAGAGAAGATTATGTTACCCTGGTGGTGATAATCAAGACGGTGAATCGTTTGATTCTAACGAAGCTGTTTCTTTTTCTTTACCGTCTTCTCCTTTACGAACTAGTTCTGATCATTGGTCTTCTTCTGCTGTTCCTCAACCGCTTCCTCTTCCTGAGTCTCCGTTGACTCGTCATCATCATGCTGCTTTACCCTTTTCCAGAAGGACGGTGGATCATGATGCTTTGAGAAGTTTAAGGTCTTCTAGCAATTTGAGTAAACCCACTTTTGAGACGGTGAATGGAAATACGAATTCTGATTTGAGAGTGAAGATTCCGCCCGCTAGAGGTTTGGTGTCAAGCAATAGTTCTTGTAAGGATACTGGAAAACACTCTCATGATAATGATTGTGACGGTATTTCCAACAACAAATATCAATTTGCTGCCAAGAGTGCCCCAACAAGCATATTCTCCAGTCCTGTTACTAGTCCACGCAGATTAAGCAGTGTAGATTTATTTCCTTCCATCAAATTTTCTCAAGATTTTAATGACATTTTGAGAATGCCTGCTAAAACTGCTCGTAGTCCAGACTTGTCTCCTCGTCGTAGCTTGGGGAACCACAGTCCTATTCATCGTCACACTATTCAAGGGGGATCGCATTCTCACCACTCTAAACATTGCTCCAGAGTGTCTCCTGAAAATAACCATGTCGATGCACATCCATTGCCCCTTCCACCGAGAGCTTCACCACCGCCGCAACAATCACCTCCACAGCATCAATCAAATGTCATGTCGCATCACTCAACAGAAAATTTTCATTCAATGAAGGGTCAATGGCAGAAAGGAAAACTTATTGGACGAGGATCGTTTGGAAGTGTTTATCAGGCAACAAACCTAGAGACTGGAGCCTCATGTGCAATGAAAGAGGTGGATCTGTTTCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTAGACCAGGAAATCAGAATTCTTGGTCAACTACACCACCCCAACATTGTTCAATATTATGGCAGTGAAATTGTTGGTGATCAATTGTGCATATATATGGAATATGTCCATCCTGGATCATTAACTAAGTTTATGCATGAACATTGTGGGGCTATGACAGAATCTGTGGTTCGCAATTTTACGCGGCATATTCTATCTGGGTTGGCGTACTTACATAGTACCAAGACTATCCACAGGGACATTAAAGGTGCAAACTTGCTGGTTGATGCATCAGGCATCGTCAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTTTCGCTGAAAGGAAGTCCATACTGGATGGCTCCTGAGCTCATGATGGCTGCCATGAAGAAAGAAACCAATCCCAACGTCGCCATGGCTGTCGATATATGGAGCTTAGGATGCACCATCATCGAAATGCTGACAGGAAAACCCCCTTGGAGCGAGTTTCCAGGGCATCAAGCCATGTTTAAGGTACTGCACAGATCCCCGGACATACCCAAAACTTTATCTCCAGAAGGACAGGATTTCCTTGAGCAGTGTTTCCGAAGGAATCCTGCAGAGCGACCATCCGCAGCGATGCTTCTGACACATGCCTTTGTGCAAAATTTGCATGATCAAGATATTATAGTTCACTCACAAGTCTGTCATAAAGAAGACACCATAGTTCATTCACAAGGATGTCATAAAGAAGACACTGGACCCAAAGATGAACCGCGTAAACACAGTCCAGGACAAAGTTCAAAACATAGCCGCGGTGTAGTGTCAGCTTCCTTTCGTGCACGAATTTTTTGCAAAATTCAAAATTTAATCGGTGACACTTCCAAAAAAACTGATACCGAGGAATCTAATCATATTAGATCTTCTCCTGTATCTCCTTGCTCGCTGACTGAAGTTAACAGTCCTCAATCTCCCTTTAATCCTAATAACCGCAATTGCATGACCGTTTCCAAACCTTCGAACATACCCTTCACGATTATGAGAATCGTGAAGCAGCTATGA 2094 0.4284 MTPTATNKSSFSSSCSSNQGGKGQSIQQRRLTRQRRLCYPGGDNQDGESFDSNEAVSFSLPSSPLRTSSDHWSSSAVPQPLPLPESPLTRHHHAALPFSRRTVDHDALRSLRSSSNLSKPTFETVNGNTNSDLRVKIPPARGLVSSNSSCKDTGKHSHDNDCDGISNNKYQFAAKSAPTSIFSSPVTSPRRLSSVDLFPSIKFSQDFNDILRMPAKTARSPDLSPRRSLGNHSPIHRHTIQGGSHSHHSKHCSRVSPENNHVDAHPLPLPPRASPPPQQSPPQHQSNVMSHHSTENFHSMKGQWQKGKLIGRGSFGSVYQATNLETGASCAMKEVDLFPDDPKSADCIKQLDQEIRILGQLHHPNIVQYYGSEIVGDQLCIYMEYVHPGSLTKFMHEHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMAAMKKETNPNVAMAVDIWSLGCTIIEMLTGKPPWSEFPGHQAMFKVLHRSPDIPKTLSPEGQDFLEQCFRRNPAERPSAAMLLTHAFVQNLHDQDIIVHSQVCHKEDTIVHSQGCHKEDTGPKDEPRKHSPGQSSKHSRGVVSASFRARIFCKIQNLIGDTSKKTDTEESNHIRSSPVSPCSLTEVNSPQSPFNPNNRNCMTVSKPSNIPFTIMRIVKQL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04949 697 MobiDBLite consensus disorder prediction 590 609 - -
Trre6g04949 697 FunFam Mitogen-activated protein kinase kinase kinase 5 301 602 - -
Trre6g04949 697 MobiDBLite consensus disorder prediction 649 673 - -
Trre6g04949 697 ProSitePatterns Protein kinases ATP-binding region signature. 310 333 IPR017441 GO:0005524
Trre6g04949 697 MobiDBLite consensus disorder prediction 639 673 - -
Trre6g04949 697 MobiDBLite consensus disorder prediction 268 282 - -
Trre6g04949 697 MobiDBLite consensus disorder prediction 1 89 - -
Trre6g04949 697 MobiDBLite consensus disorder prediction 46 76 - -
Trre6g04949 697 Pfam Protein kinase domain 305 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04949 697 ProSiteProfiles Protein kinase domain profile. 304 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04949 697 MobiDBLite consensus disorder prediction 590 618 - -
Trre6g04949 697 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 22 573 - -
Trre6g04949 697 SMART serkin_6 304 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04949 697 SUPERFAMILY Protein kinase-like (PK-like) 278 577 IPR011009 -
Trre6g04949 697 Gene3D Transferase(Phosphotransferase) domain 1 301 604 - -
Trre6g04949 697 MobiDBLite consensus disorder prediction 214 294 - -
Trre6g04949 697 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04949 Trre-Chr6 52145735 52151414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04949 30 567 MAP Kinase Kinase Kinase AT5G66850 49.396 1.12e-148 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre6g04949 Pkinase 4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04949 - - gmx:100781764 845.884