Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04920 ATGGCTATTCGTGTTACCTTCTCCTTTTCCGGCTATGTCGCCCAAAATCTTGTTTCCTCCGCCGGCGTTCGAGTCGCGAATTCTCGTTGTGTCCAAGAATGTTGCATCCTTTCTCGTATCTTTGGATCCAATCAGAAAAAACCCGATCTCGATCGTTCCGGCGGCGTTCGCAATTTTTACTCCGAATTTAAGAGACCTAAAAATTGTGCCTATTCTACCCTCGCCGGCGAGCTTCTCAACGAAGGTTGTAATAATCCGATCATTTTAGGATTAATTTCGATGATGAAGTCAACGTCTGTTGTTTCCGGGTCAACATCGGCTGCTATGGGTATTATGGGTATTTCACCATTCAAAACCTCTTCAATTATACCCTTTTTGCAGGGTTCAAAGTGGCTTCCTTGTAATGAATCTGTTGCTATTCCTACAACTTGGGAGGTTGATAAAGGTGGAACAGAAACACAGTGTGTTACTGTTTCTAACACAGAATCGCGTTTGAATTTGAATCCAAAGGAGAGTAGAAATAGTTGGGTTTCGAAATTGTTGAATGTTTGTTCTGAAGATGCTAAAGCTGTTTTCACTGCTGTTACTGTTAGTTTATTGTTTAAATCGTTTTTGGCCGAACCTAAATCTATTCCTTCTGCTTCTATGTATCCAACTCTTCAAGTTGGTGATCGTGTTCTTACAGAAAAGTTTTCTTTCTTCTTTAGAAAGCCTGATGTTTCTGATATTGTGATTTTCAAAGCACCAGCTTGTTTGAAGGAATATGGTTTTAGTTCATCTGATGTTTTTATTAAAAGGGTTGTGGCTAAAGCTGGTGATATTGTTGAAGTTCGTGGTGGGAAACTACTGATCAATGGTGTTGCTGAAGAAGAGGAATTTGTATTAGAACCTCTTGCTTACGAGTTACCTCCAACGGTTGTGCCAGAAGGACATGTGTTTGTGATGGGAGACAATCGTAACAAAAGTTTTGATTCTCATAACTGGGGTCCACTCCCGATCGAGAACATTGTTGGTAGGTCTATGTTTCGCTACTGGCCTCCATCCAAAGTAGCTGACACTGTCACAGTTCATACAGCTCCACCTGGAAATAAATCTGTTTCAGTTTCTTGA 1110 0.4081 MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSRIFGSNQKKPDLDRSGGVRNFYSEFKRPKNCAYSTLAGELLNEGCNNPIILGLISMMKSTSVVSGSTSAAMGIMGISPFKTSSIIPFLQGSKWLPCNESVAIPTTWEVDKGGTETQCVTVSNTESRLNLNPKESRNSWVSKLLNVCSEDAKAVFTAVTVSLLFKSFLAEPKSIPSASMYPTLQVGDRVLTEKFSFFFRKPDVSDIVIFKAPACLKEYGFSSSDVFIKRVVAKAGDIVEVRGGKLLINGVAEEEEFVLEPLAYELPPTVVPEGHVFVMGDNRNKSFDSHNWGPLPIENIVGRSMFRYWPPSKVADTVTVHTAPPGNKSVSVS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04920 369 Pfam Signal peptidase, peptidase S26 188 345 IPR019533 GO:0004252|GO:0006465
Trre6g04920 369 FunFam Peptidase/ serine-type peptidase 213 344 - -
Trre6g04920 369 Gene3D Umud Fragment, subunit A 201 358 - -
Trre6g04920 369 NCBIfam signal peptidase I 190 346 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g04920 369 ProSitePatterns Signal peptidases I serine active site. 213 220 IPR019756 GO:0004252|GO:0016020
Trre6g04920 369 SUPERFAMILY LexA/Signal peptidase 203 350 IPR036286 -
Trre6g04920 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 263 275 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g04920 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 204 220 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g04920 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 307 326 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g04920 369 CDD S26_SPase_I 207 339 IPR019533 GO:0004252|GO:0006465
Trre6g04920 369 ProSitePatterns Signal peptidases I signature 3. 312 325 IPR019758 GO:0004252|GO:0016020
Trre6g04920 369 PANTHER SIGNAL PEPTIDASE I 158 351 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04920 Trre-Chr6 51967425 51969135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04920 216 346 MADS-box Gene Family AT1G29960 33.333 1.41e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04920 K03100 - gmx:100817525 521.931