Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04912 ATGGCACCAAGTTTTGACTGTGTTAATAGCCTTCTTTGCACCGAGGAAGATAGCAGTGTTTTTGATGATGCTGTTGATTCGATTGAAGAGGTGTACGAGGATTCGTGGCGTCCTAGGTTCGACCATCAGAGCAACCACCACCACCAACAACAACAGCAACATCGATTTGGTGCTGTTCCTGATGAGTTACCATTGCAGAGTGAAGAGTGTTTGGTTCTGATGTTGGAAAAAGAATTTCAACAATGGCCTGGTGTTGATTACTTGAATAGATTGCAATCTGGGGCTTTGGATGTTGCAGCAAGAAATGAAGCCATCGATTGGATTCAGAAGGTTCAAGCACATTTCGGTTTCGGTCCTCTATGTGCTTATCTGTCCATTAATTATATGGATCGTTTCCTTGCTGCGTATGAATTACCGAAGGGAAGGGCTTGGACAATGCAATTGTTGGCTGTAGCCTGCATATCTTTGGCAGCGAAAGTAGAAGAGACCAGTGTTCCTATGACTCTTGATTTGCAGATTGGTGAGTCGAAGTTTGTATTTGAAGCGAAAACCATTCAGAGAATGGAACTTCTAGTACTTAGTACATTGAAGTGGAGAATGCAATCAATTACTCCTTTTTCCTTCATTGAATATTTCCTTTCTAAGATTACCGATAATGACGATAAGAGTTCATTAACGTCTTCAATTTCGCAATCTACTCAACTTATATCAACTACCATTAAAGGTATTGACTTCTTGGAATTCAAACCATCAGAAATTGCAGCAGCAGTGGCTACATGTGTTGTTGGGGAAACCCAAGCAATTGATACCAACAAATCAATTTCTACTCTGATTCAATACATAGAAAAGGAGAGATTATTGAAGTGTATTGAAAAAGTCCAAGAAATGTCATTGAGCAGTGTTGTGACTGGCAAGTTTTCAAGTGCATCTTCTGTTCCTAGTGTGCCTCAAAGCCCAATAGGTGTGTTGGATACAATCTGCTTCAGCCAGAAAAGTGATGACACCAATGTTGGTGTTGGTGTTGGTGTTGGTGGATCATGTTCTTCTTCACATATCAGTAGCCCAGAAGCTAAGAGAAGAAAGCTAAACAAAACTTGTGGGGCATAA 1107 0.4065 MAPSFDCVNSLLCTEEDSSVFDDAVDSIEEVYEDSWRPRFDHQSNHHHQQQQQHRFGAVPDELPLQSEECLVLMLEKEFQQWPGVDYLNRLQSGALDVAARNEAIDWIQKVQAHFGFGPLCAYLSINYMDRFLAAYELPKGRAWTMQLLAVACISLAAKVEETSVPMTLDLQIGESKFVFEAKTIQRMELLVLSTLKWRMQSITPFSFIEYFLSKITDNDDKSSLTSSISQSTQLISTTIKGIDFLEFKPSEIAAAVATCVVGETQAIDTNKSISTLIQYIEKERLLKCIEKVQEMSLSSVVTGKFSSASSVPSVPQSPIGVLDTICFSQKSDDTNVGVGVGVGGSCSSSHISSPEAKRRKLNKTCGA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04912 368 FunFam D6-type cyclin 197 291 - -
Trre6g04912 368 SUPERFAMILY Cyclin-like 65 200 IPR036915 -
Trre6g04912 368 PANTHER CYCLINS 66 295 IPR039361 -
Trre6g04912 368 FunFam D2/4-type cyclin 84 196 - -
Trre6g04912 368 SMART cyclin_7 106 194 IPR013763 -
Trre6g04912 368 CDD CYCLIN_AtCycD-like_rpt2 203 293 - -
Trre6g04912 368 SUPERFAMILY Cyclin-like 185 296 IPR036915 -
Trre6g04912 368 Gene3D - 74 292 - -
Trre6g04912 368 Pfam Cyclin, N-terminal domain 73 200 IPR006671 -
Trre6g04912 368 MobiDBLite consensus disorder prediction 346 368 - -
Trre6g04912 368 Pfam Cyclin, C-terminal domain 203 304 IPR004367 -
Trre6g04912 368 CDD CYCLIN_AtCycD-like_rpt1 100 198 - -
Trre6g04912 368 ProSitePatterns Cyclins signature. 101 132 IPR006671 -
Trre6g04912 368 MobiDBLite consensus disorder prediction 354 368 - -
Trre6g04912 368 Gene3D - 84 201 - -
Trre6g04912 368 SMART Cyclin_C_2 203 318 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04912 Trre-Chr6 51869419 51871522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04912 74 337 Core Cell Cycle Gene Families AT2G22490 48.889 2.93e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04912 K18810 - gmx:547739 433.335