Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04909 ATGGGCTATCTTTTTTGCAATGCAGAATCTGCAATTGCTACTTGTGATCCTCACTACTGGGATCTCAAAAAAAGAAACAAATCAATAACAAACCGTACACATACTATCAAAGAGTTTAACTACACTGACCTTGTTGCCGCCACTAACGGTTTCTCTGCCGAAAGCTACCTAGGTAAAGGTAGCCACGGCAGAGTTTACCGAGCTACGTTAAACGGCGGCGATCTGATCGTCGCCGTTAAAACAACAAAGTTAACTGCAAAGACAATAAAAAATCACAACAACAACAACAACTGCACCGGTTGCGGTAACTGTACAAGTCCAGCTGAAAACGAGATCGAGATTCTTTCACAAGTTCCAAATCATCGTCTCGTGAATCTCATCGGTTACTGCACCGATCCTAACGGCAATAAATTAATTGTCGTTGAATACATGCCAAACGGTTCACTTCACGATCTATTACATTCTACAAATAAACCGCCCGGTTGGACCAAACGGTTCCGATTCGCATTACAAGTTGCGAAAGCGGTTCGAACGTTACACGGTTCAAATCCACCGGTGATTCATCGTGATATTAAATCCTCCAATGTTTTAATCGATCGGGATTGGAAAGCGAGACTCGGTGATTTCGGTCTTGCTCTTAGAGGACACGTGGAGGACGTTCGTGTTAAGTGTACACCACCGGCGGGGACGTTAGGATATCTCGATCCATGCTATCTTGCGCCGGAGGATCTTAGTGCGAAGAGTGATGTGTTCAGTTTCGGGATCTTGTTGTTGGAGATTATTAGCGGAAGGAATGCTATTGATGTTAATTATAGTCCTCCGTCGGTTGTTGATTGGGCGGTGCCGTTAATTAGAAGAGGTGATTTCGTCGGGATCTGTGATCGGAGAATTGGAACGCCGTCGGATATGGCTGTGATGAGACAGATTGCGGTGATTGCAGCGAGATGTGTTAGATCGACAGCGGAGAAGAGACCGGCGATGGTGGAGGTTGTGGAGTGTCTTAAATTGGCGAGGAAGAGGATTCATTCGTCGCCGATTTGGAGTAGTTTGAGACGGCGCGTGACGCGTGTGGAGAGTGCGCAACCGTTGATGAGTTGGGAAGAAGCTTATGATCATGATTATGGTTATACTAATAATTATGATTATCATCATAGTAATTATGATTGGGATGATAATAAGAGCGAGGAAGTTGTGAAGATTGTAAAGAGTGGAAGCAGTAGAAGAAAGAGTAAAGTATCAAGTGTAGTCAGTGTAGATTATGAGATTAAACCCTCCAAAAAAGGAATAAGATCTAAGCCGTCGAAGAAAATAACGAGATCTAAGACCGTTGGTTCTTCTGGTTGTGTTAGTAGTTGTAGTAGAAAGAGTGGAATTCTAATGGTTTCCGAGAAAACGGGTGTAATAAAGTTAAAAAAGTCAAAGTCAACGGGAGTCTTGCAAGGTCCTCTGCTTTTGCATCAGAAGAAGAATGATGTAATTCATTCTGGCGAGTCCGAGACGATAGCATTAGCGATGTCGAAGTTGGTTATCAGAGATAATAAGAAATCGGAAAAAAAGATGCTCGAAAAACCATTGGTTAATTCTTATGGTTGGGAGTCTGAATAA 1605 0.4299 MGYLFCNAESAIATCDPHYWDLKKRNKSITNRTHTIKEFNYTDLVAATNGFSAESYLGKGSHGRVYRATLNGGDLIVAVKTTKLTAKTIKNHNNNNNCTGCGNCTSPAENEIEILSQVPNHRLVNLIGYCTDPNGNKLIVVEYMPNGSLHDLLHSTNKPPGWTKRFRFALQVAKAVRTLHGSNPPVIHRDIKSSNVLIDRDWKARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSVVDWAVPLIRRGDFVGICDRRIGTPSDMAVMRQIAVIAARCVRSTAEKRPAMVEVVECLKLARKRIHSSPIWSSLRRRVTRVESAQPLMSWEEAYDHDYGYTNNYDYHHSNYDWDDNKSEEVVKIVKSGSSRRKSKVSSVVSVDYEIKPSKKGIRSKPSKKITRSKTVGSSGCVSSCSRKSGILMVSEKTGVIKLKKSKSTGVLQGPLLLHQKKNDVIHSGESETIALAMSKLVIRDNKKSEKKMLEKPLVNSYGWESE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04909 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Trre6g04909 534 PANTHER OS01G0253100 PROTEIN 32 337 - -
Trre6g04909 534 ProSiteProfiles Protein kinase domain profile. 51 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04909 534 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Trre6g04909 534 Gene3D Phosphorylase Kinase; domain 1 35 143 - -
Trre6g04909 534 SUPERFAMILY Protein kinase-like (PK-like) 37 368 IPR011009 -
Trre6g04909 534 Gene3D Transferase(Phosphotransferase) domain 1 144 348 - -
Trre6g04909 534 SMART serkin_6 51 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04909 534 FunFam Serine/threonine-protein kinase-like protein 144 347 - -
Trre6g04909 534 Pfam Protein tyrosine and serine/threonine kinase 54 334 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04909 Trre-Chr6 51844797 51846401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04909 17 345 Receptor kinase-like Gene Family AT3G59420 40.719 3.23e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre6g04909 PK_Tyr_Ser-Thr 4.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04909 - - cam:101503747 784.252