Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04908 ATGGATTTTGAAGAACACGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGGGATTCCCGGTTACGCCGGTAGCAGGTTACGACTCGCTAGGAAACTCAGGTGTCAGGACTAAAATGAGCGGCGGCGGTGGAGCTGACGCTGGAGAAACAGCAACAATAACAACCACTGGCGGTGGTCGCAAAAACGGGCCCACAGGAACGGTTAAATACAGAGAATGTCAAAAGAATCACGCCGTTAGTATCGGTGGTCACGCCGTTGATGGATGTTGTGAGTTTTTAGCAGCTGGAGAAGAAGGAACACTGGAAGCCGTAATTTGCGCTGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAGATCGACGGTGAAATTACTTCTCATAATCAACAATCACGGTCGTCTCATCATGCTCATGCTCAGTACCACCACCAGAATCATCAAGTATCCCCTTACTACCACCGTGCTGTGATACCACCTCCGCCGGGGTACCACCACATGGTAACTCCATCACCGGTATCACATCATAGGCCGTTAGCTCTTCCACCTGCTGCATCGAGTGGTGGATTCAGTAGAGAAGATGATGACGTGTCAATTCCGAGTAGCAGCGGTGGCGGTGGTGGTGGAATGAAGAAAAGGTTTAGAACAAAATTCACTGCGGAGCAGAAAGAAAAATTGCTTGCATTTGCAGAGCAGATTGGATGGAGAATTCAGAAGGAAGATGAAGGTGCAATTGAACAATTCTGTGCTGAGAATTGTATTAAGAGAAATGTGCTTAAGGTTTGGATGCATAATAACAAGCACACTCGTGGTAAGAAACCCTAA 828 0.4698 MDFEEHEDEEEEEEEEEEMGFPVTPVAGYDSLGNSGVRTKMSGGGGADAGETATITTTGGGRKNGPTGTVKYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEITSHNQQSRSSHHAHAQYHHQNHQVSPYYHRAVIPPPPGYHHMVTPSPVSHHRPLALPPAASSGGFSREDDDVSIPSSSGGGGGGMKKRFRTKFTAEQKEKLLAFAEQIGWRIQKEDEGAIEQFCAENCIKRNVLKVWMHNNKHTRGKKP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04908 275 MobiDBLite consensus disorder prediction 172 213 - -
Trre6g04908 275 SUPERFAMILY Homeodomain-like 201 273 IPR009057 -
Trre6g04908 275 MobiDBLite consensus disorder prediction 127 149 - -
Trre6g04908 275 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g04908 275 MobiDBLite consensus disorder prediction 1 68 - -
Trre6g04908 275 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 270 - -
Trre6g04908 275 NCBIfam homeobox domain, ZF-HD class 212 268 IPR006455 -
Trre6g04908 275 Gene3D - 199 273 - -
Trre6g04908 275 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Trre6g04908 275 FunFam Zinc-finger homeodomain protein 2 201 273 - -
Trre6g04908 275 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Trre6g04908 275 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04908 Trre-Chr6 51810991 51811818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04908 11 270 ZF-HD Transcription Factor Family AT4G24660 47.126 5.68e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre6g04908 ZF-HD_dimer 3.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04908 - - mtr:11435175 382.874