Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04905 ATGGGTGGTGCCGTTCCAGAAAACCTAAACAGAGAACAGTATGTCTACTTAGCAAAACTAGCAGAACAAGCAGAACGCTATGAAGAGATGGTTTCCTTCATGCAGAAGCTAGTCGTAGCTTCCACACCATCTTCCGAACTTAGCGTCGAAGAGAGAAACCTAATTTCCGTCGCTTACAAAAACGTCATCGGTTCACTCCGTGCTGCTTGGAGAATTGTTTCTTCTATTGAACAGAAAGAAGAAAGTCGTAAGAATGAAGATCATGTTCTTCTTGTTCAGCAATATAGATCTAAAGTTGAATCAGAATTGTCTAATGTTTGTGCTAGTATTCTTCAACTTTTGGATTCCAATCTTATTCCTTCTGCTTCTTCTAGTGAATCTAAGGTTTTTTATTATAAGATGAAAGGTGATTATCATAGGTATTTGGCTGAGTTTAAGATTGCTGATGAAAGAAAATCTGCTGCTGAGGATACTATGTTGTCTTACAAAGCTGCACAGGATATTGCTGCTGCTGATCTTCCATCTACTCATCCTATAAGATTGGGTTTGGCTCTCAATTTCTCTGTTTTCTATTATGAAATTCTCAACCAGTCTGACAAAGCTTGTGCAATGGCCAAACAGGCTTTTGAGGAAGCAATTGCTGAGCTTGATACCTTGGGAGAAGAATCCTACAAAGACAGCACACTTATAATGCAACTTTTGAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGATCCGCTTGATGAGGCCTGA 759 0.3992 MGGAVPENLNREQYVYLAKLAEQAERYEEMVSFMQKLVVASTPSSELSVEERNLISVAYKNVIGSLRAAWRIVSSIEQKEESRKNEDHVLLVQQYRSKVESELSNVCASILQLLDSNLIPSASSSESKVFYYKMKGDYHRYLAEFKIADERKSAAEDTMLSYKAAQDIAAADLPSTHPIRLGLALNFSVFYYEILNQSDKACAMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDPLDEA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04905 252 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Trre6g04905 252 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Trre6g04905 252 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Trre6g04905 252 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Trre6g04905 252 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Trre6g04905 252 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
Trre6g04905 252 Pfam 14-3-3 protein 17 242 IPR023410 -
Trre6g04905 252 SMART 1433_4 11 251 IPR023410 -
Trre6g04905 252 FunFam 14-3-3 protein epsilon 8 252 - -
Trre6g04905 252 Coils Coil 17 37 - -
Trre6g04905 252 PIRSF 14-3-3 6 251 IPR000308 -
Trre6g04905 252 Gene3D - 4 251 IPR036815 -
Trre6g04905 252 PANTHER 14-3-3 PROTEIN 11 246 IPR000308 -
Trre6g04905 252 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
Trre6g04905 252 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Trre6g04905 252 SUPERFAMILY 14-3-3 protein 9 244 IPR036815 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04905 Trre-Chr6 51793633 51795859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04905 8 246 14-3-3 family AT5G10450 84.100 3.36e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04905 K06630 - csv:101222827 439.113