Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04895 ATGAAAGGAGAATACGTAGATCAACATCAAAATCCAAACAAAGGAACAGAAACACCACCTTCACTATTATTCTCGAAGCTTCATCAATCAAACTCTCAAAACAATCCATTTCATCCTTTTCAACTTTCTCATGAATGTCAAACAATCGGAGAAGATAGCGGCGGCGGTGGTGTTCAGAAACCGAACTCATCCGGCGATGGTGCGACAATCGAGGTTGTTAGACGTCCAAGAGGACGTCCGCCTGGATCTAAAAACAGACCAAAACCGCCTGTTATCATAACACGCGATTCGGAACCTGGAGCGGTTGCTAACGTTACTCTCCGTCAACCGTCAACTACACCTGGAACTACCGTTACTTTTCACGGTCGTTTTGATATTCTCTCTGTAACCGCTACTTTTCTTCCTCAACAATCTGGTGGCGGCGGTGGTGGTGGTGGTTCTCCGGCGGTTCCTAGTGGATTCTCGATCTCGCTTGCTGGACCGCAAGGGCAGATCGTTGGAGGAATTGTTGCCGGAAATTTAATAGCGGCGGGAACGGTTTTTATTATAGCTGCTTCGTTTAATAATCCGTCGTATTACAGGTTACCGATGGAAGAAGAAGGTGGAAACTCGGTGTCTGGTGGTGATGGAAATTCGCCGGCTGTTTCCGGTGCGGTGGATAGCGGTCATGGTCAAGGTGGTGAGTCGTGTGGGATGTCTATGTACAGCTGTCATATGCCATCATCTGATGTGATTTGGGCTCCATCTACAAGACCACCACCTTACTGA 768 0.4766 MKGEYVDQHQNPNKGTETPPSLLFSKLHQSNSQNNPFHPFQLSHECQTIGEDSGGGGVQKPNSSGDGATIEVVRRPRGRPPGSKNRPKPPVIITRDSEPGAVANVTLRQPSTTPGTTVTFHGRFDILSVTATFLPQQSGGGGGGGGSPAVPSGFSISLAGPQGQIVGGIVAGNLIAAGTVFIIAASFNNPSYYRLPMEEEGGNSVSGGDGNSPAVSGAVDSGHGQGGESCGMSMYSCHMPSSDVIWAPSTRPPPY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04895 255 MobiDBLite consensus disorder prediction 200 225 - -
Trre6g04895 255 PIRSF ESCAROLA 10 100 IPR014476 GO:0003680
Trre6g04895 255 PIRSF ESCAROLA 98 249 IPR014476 GO:0003680
Trre6g04895 255 Gene3D - 98 207 - -
Trre6g04895 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 202 - -
Trre6g04895 255 MobiDBLite consensus disorder prediction 1 98 - -
Trre6g04895 255 CDD DUF296 100 187 IPR005175 -
Trre6g04895 255 ProSiteProfiles PPC domain profile profile. 62 208 IPR005175 -
Trre6g04895 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 52 98 IPR014476 GO:0003680
Trre6g04895 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 189 IPR005175 -
Trre6g04895 255 MobiDBLite consensus disorder prediction 9 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04895 Trre-Chr6 51732555 51733430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04895 66 255 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 55.365 2.78e-71 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04895 - - gmx:100815772 293.893