Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04893 ATGTTGAATTTTCTCATGTCTTGTTTTCCCGACGAATTGTTGCAGACACATCTTGTATTTGCAACATCTGAATCCAATATTGTGACGTTCCTTCCTGGTTTTCAAGGGCCACTTCCTTTTCTACTAGAAACTGGATACATTGAAGTAAGTGAAACTGAAACAGATGAAAACGCTGAACTGTTCTACTATTTTATAGAATCTGAGAATAATCCTAAAGAAGATCCTCTCTTGCTTTGGCTTACTGGTGGTCCTGGTTGCTCTGCTTTCTCTGGCATTTTCTTTGAAATAGGTCCAATAACATTTATAAATGATGAATACAATGGGAGCTTACCAAATTTGGCATTGAAGTCACATTCATGGACAAAGGTTAGTAATATTATATTTTTGGATTTGCCGGCTGGTACTGGATTCTCATATCCCAAAACAGAAGCTGCTGTTCAGCAAAGCACTTGGAAACTAGTTCACAATGCTCATCAATTTCTTAGAAAGTGGCTGATTGATCATCCAAAATTTATCTCACATGAAGTATACATTGCTGGTGACTCATACTCTGGCATTCCTCTCCCAATCATTGTTCAAGAAATTTCATATGGAAATGATGATGGCCTCCAACCGTGGATAAACCTCCAAGGATACATACTGGGAAATCCCTTAACAACACCAAAAGATGATGATTACAAAATACCATTTAGTCATGGTATGGCACTAATTTCTGATGAACTCTACCAGTCACTGGAAAAGAATTGTAGAGGGGAGTATAAACATATAGATTCCCAAAACGTATTTTGTTTGAAAGATTTCCAATCCTACATGGAGGCTATTTCAAATGTGTGTCAGCCTCATATTTTGGAACCAAACTGCGAGTCTGATTTTGATGATATAATTGAGGTTCCTCGGAGGACACTTCTTATTGATAAAGCTGATCACACCATTATTAGTTCTTCTCTCAATATGCCACCTTTAAGTTGTCGGACTCATGTATATTTCCTCAGTTCCTATTGGGCTAACGATGATAATGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGGAAAATGGAAGCGATGTAACTGGTACCTACCTTTTAAGCATGAAACCCATGACAGTTTTCCATATCATGCAAATCTTAGCAGAAAAGGCTTTCGTTCATTAATATACAGCGGGGATCATGACATGAAAGTTCCATTCTTGGCAACTCAAGCGTGGATAAAATCTTTAAATTACTCAATTGTTGATGATTGGAGGCAATGGTATTATAATGACCAAGTAGCAGGATACACGAGGACTTACTCAAATCGAATGACATTTGCAACTGTGAAGGGGGGAGGACATACAGCTCCCGAATTCAAACCTGAAGAATGCTCAGCCATGTTCATTAGGTGGATATCTAATAAGCCACTTTAG 1407 0.3817 MLNFLMSCFPDELLQTHLVFATSESNIVTFLPGFQGPLPFLLETGYIEVSETETDENAELFYYFIESENNPKEDPLLLWLTGGPGCSAFSGIFFEIGPITFINDEYNGSLPNLALKSHSWTKVSNIIFLDLPAGTGFSYPKTEAAVQQSTWKLVHNAHQFLRKWLIDHPKFISHEVYIAGDSYSGIPLPIIVQEISYGNDDGLQPWINLQGYILGNPLTTPKDDDYKIPFSHGMALISDELYQSLEKNCRGEYKHIDSQNVFCLKDFQSYMEAISNVCQPHILEPNCESDFDDIIEVPRRTLLIDKADHTIISSSLNMPPLSCRTHVYFLSSYWANDDNVRKALHIRKGSIGKWKRCNWYLPFKHETHDSFPYHANLSRKGFRSLIYSGDHDMKVPFLATQAWIKSLNYSIVDDWRQWYYNDQVAGYTRTYSNRMTFATVKGGGHTAPEFKPEECSAMFIRWISNKPL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04893 468 FunFam Serine carboxypeptidase-like 11 22 468 - -
Trre6g04893 468 FunFam Carboxypeptidase 322 467 - -
Trre6g04893 468 FunFam Carboxypeptidase 370 465 - -
Trre6g04893 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Trre6g04893 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Trre6g04893 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Trre6g04893 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Trre6g04893 468 Pfam Serine carboxypeptidase 32 465 IPR001563 GO:0004185|GO:0006508
Trre6g04893 468 Gene3D alpha/beta hydrolase 38 468 IPR029058 -
Trre6g04893 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 452 IPR001563 GO:0004185|GO:0006508
Trre6g04893 468 SUPERFAMILY alpha/beta-Hydrolases 28 467 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04893 Trre-Chr6 51713025 51720211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04893 320 468 Calmodulin-binding Proteins AT2G22960 61.745 2.55e-61 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04893 K16296 - gmx:100792006 629.017