Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04891 ATGATTATACTATTACACCTTATCCTATCACACCTTGTGTTTGCAACATCTGAATCCAATATTGTAAAGTTCCTTCCTGGTTTTCAAGGGCCACTTCCTTTTCTACTAGAAACTGGATACATTGAAGTAAGTGAAAATGAATCAGATGAGAATGCAGAAGTTTTCTACTATTTTATAGAATCTGAGAGCAATCCTATGGAAGATCCTCTCTTGCTTTGGCTTACTGGTGGTCCTGGTTGCTCTGCTTTCTCTGGCCTTGCCTTTGAAATAGGTCCAATAACATTTATAAATGATGAATACAATGGGAGCTTACCAAATTTGGCATTGAGGCCCCATTCATGGACAAAGATTAGTAATATTATATTTTTGGATTTGCCTGCTGGTACTGGATTCTCATATCCCAAAACAGAAAGTGCTGTTCAGCAAAGCACCTGGAAGTTAGCTCACAATGCTCATCAATTTCTTAGGAAGTGGCTGATTGATCATCCAAAATTTCTATCAAATGAAGTATACATTGCTGGTGACTCATACTCAGGCATTCCTGTCCCAATTATTGTTCAAGAAATTTCATATGGAAATTATGATGGCCTCCAACCGTGGATAAACCTCCAGGGATACATACTGGGAAATCCCTTAACAACACCAAACGATGAAAATTACCAAATACCATTTAGTCATGGTATGGCACTAATTTCTGATGAACTCTACCAGTCATTGGAAAAGAATTGTAGAGGCGAGTATACGAATATAGATTCCCAAAACGTATTTTGTTTGAAAGATTTTCAATCCTACACAGAGACTATTTCAGGAATATATAAGGCTTATATTTTGGAACCGAACTGCGAGTTTGATTTTGTTGGTGGAATTGAAGTTCCTTGGAGGACACCTCTTATTGATAAAGTTCATCACACCATTTTTAGTTCTTCTCTCACAATGTCACCTTTAAATTGTCGGACTGACGCATATTTCCTTAGTACTTATTGGGCTAACGATGATAATGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGGAGAATGGAACCGATGTAATTACGACATACCTTTTAAGGACGAAACCCTTGACAGTTTCCCATATCATGCAAATCTCAGCAGAAAAGGCTTTCGTTCATTAATATACAGTGGGGATCATGACATGCTAATTCCATTCTTGGCAACTCAAGCATGGATAAAATCTTTAAATTACTCAATTGTTGATGATTGGAGGCAATGGTATTACAATGACCAAGTTGCAGGATATACGAGGACTTACTCAAATCGGATGACATATGCAACTGTGAAGGGGGGAGGACATACAGCTCCCGAGTACAAACCTGAAGAATGCTTAGCCATGTTTAGTAGGTGGATATCTAATAAGATACTTTAG 1389 0.3794 MIILLHLILSHLVFATSESNIVKFLPGFQGPLPFLLETGYIEVSENESDENAEVFYYFIESESNPMEDPLLLWLTGGPGCSAFSGLAFEIGPITFINDEYNGSLPNLALRPHSWTKISNIIFLDLPAGTGFSYPKTESAVQQSTWKLAHNAHQFLRKWLIDHPKFLSNEVYIAGDSYSGIPVPIIVQEISYGNYDGLQPWINLQGYILGNPLTTPNDENYQIPFSHGMALISDELYQSLEKNCRGEYTNIDSQNVFCLKDFQSYTETISGIYKAYILEPNCEFDFVGGIEVPWRTPLIDKVHHTIFSSSLTMSPLNCRTDAYFLSTYWANDDNVRKALHIRKGSIGEWNRCNYDIPFKDETLDSFPYHANLSRKGFRSLIYSGDHDMLIPFLATQAWIKSLNYSIVDDWRQWYYNDQVAGYTRTYSNRMTYATVKGGGHTAPEYKPEECLAMFSRWISNKIL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04891 462 Gene3D alpha/beta hydrolase 32 462 IPR029058 -
Trre6g04891 462 SUPERFAMILY alpha/beta-Hydrolases 22 460 IPR029058 -
Trre6g04891 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 21 446 IPR001563 GO:0004185|GO:0006508
Trre6g04891 462 FunFam Carboxypeptidase 364 459 - -
Trre6g04891 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Trre6g04891 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Trre6g04891 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Trre6g04891 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Trre6g04891 462 FunFam Serine carboxypeptidase-like 11 16 462 - -
Trre6g04891 462 Pfam Serine carboxypeptidase 26 459 IPR001563 GO:0004185|GO:0006508
Trre6g04891 462 FunFam Carboxypeptidase 316 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04891 Trre-Chr6 51694386 51698358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04891 314 462 Calmodulin-binding Proteins AT2G22960 62.416 4.39e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04891 K16296 - gmx:100792006 647.121