Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04890 ATGGTGAAGTTTAGATGCTTGTTTAACATGATTATACTATTACACCTTATCCTATCACACCTTGTGTTTGCAACATCTGAATCCAATATTGTAAAGTTCCTTCCTGGTTTTCAAGGGCCACTTCCTTTTCTACTAGAAACTGGATACATTGAAGTAAGTGAAAATGAATCAGATGAGAATGCAGAAGTTTTCTACTATTTTATAGAATCTGAGAGCAATCCTATGGAAGATCCTCTCTTGCTTTGGCTTACTGGTGGTCCTGGTTGCTCTGCTTTCTCTGGCCTTGCCTTTGAAATAGGTCCAATAACATTTATAAATGATGAATACAATGGGAGCTTACCAAATTTGGCATTGAGGCCCCATTCATGGACAAAGATTAGTAATATTATATTTTTGGATTTGCCTGCTGGTACTGGATTCTCATATCCCAAAACAGAAAGTGCTGTTCAGCAAAGCACCTGGAAGTTAGCTCACAATGCTCATCAATTTCTTAGGAAGTGGCTGATTGATCATCCAAAATTTCTATCAAATGAAGTATACATTGCTGGTGACTCATACTCAGGCATTCCTGTCCCAATTATTGTTCAAGAAATTTCATATGGAAATTATGATGGCCTCCAACCGTGGATAAACCTCCAGGGATACATACTGGGAAATCCCTTAACAACACCAAACGATGAAAATTACCAAATACCATTTAGTCATGGTATGGCACTAATTTCTGATGAACTCTACCAGTCATTGGAAAAGAATTGTAGAGGCGAGTATACGAATATAGATTCCCAAAACGTATTTTGTTTGAAAGATTTTCAATCCTACACAGAGACTATTTCAGGAATATATAAGGCTTATATTTTGGAACCGAACTGCGAGTTTGATTTTGTTGGTGGAATTGAAGTTCCTTGGAGGACACCTCTTATTGATAAAGTTCATCACACCATTTTTAGTTCTTCTCTCACAATGTCACCTTTAAATTGTCGGACTGACGCATATTTCCTTAGTACTTATTGGGCTAACGATGATAATGTTCGCAAAGCACTGCACATTCGAAAGGGAAGTATAGGAGAATGGAACCGATGTAATTACGACATACCTTTTAAGGACGAAACCCTTGACAGTTTCCCATATCATGCAAATCTCAGCAGAAAAGGCTTTCGTTCATTAATATACAGTGGGGATCATGACATGCTAATTCCATTCTTGGCAACTCAAGCATGGATAAAATCTTTAAATTACTCAATTGTTGATGATTGGAGGCAATGGTATTACAATGACCAAGTTGCAGGATATACGAGGACTTACTCAAATCGGATGACATATGCAACTGTGAAGGGGGGAGGACATACAGCTCCCGAGTACAAACCTGAAGAATGCTTAGCCATGTTTAGTAGGTGGATATCTAATAAGATACTTTAG 1416 0.3785 MVKFRCLFNMIILLHLILSHLVFATSESNIVKFLPGFQGPLPFLLETGYIEVSENESDENAEVFYYFIESESNPMEDPLLLWLTGGPGCSAFSGLAFEIGPITFINDEYNGSLPNLALRPHSWTKISNIIFLDLPAGTGFSYPKTESAVQQSTWKLAHNAHQFLRKWLIDHPKFLSNEVYIAGDSYSGIPVPIIVQEISYGNYDGLQPWINLQGYILGNPLTTPNDENYQIPFSHGMALISDELYQSLEKNCRGEYTNIDSQNVFCLKDFQSYTETISGIYKAYILEPNCEFDFVGGIEVPWRTPLIDKVHHTIFSSSLTMSPLNCRTDAYFLSTYWANDDNVRKALHIRKGSIGEWNRCNYDIPFKDETLDSFPYHANLSRKGFRSLIYSGDHDMLIPFLATQAWIKSLNYSIVDDWRQWYYNDQVAGYTRTYSNRMTYATVKGGGHTAPEYKPEECLAMFSRWISNKIL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04890 471 Pfam Serine carboxypeptidase 35 468 IPR001563 GO:0004185|GO:0006508
Trre6g04890 471 FunFam Serine carboxypeptidase-like 11 25 471 - -
Trre6g04890 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 455 IPR001563 GO:0004185|GO:0006508
Trre6g04890 471 FunFam Carboxypeptidase 325 470 - -
Trre6g04890 471 Gene3D alpha/beta hydrolase 41 471 IPR029058 -
Trre6g04890 471 SUPERFAMILY alpha/beta-Hydrolases 31 469 IPR029058 -
Trre6g04890 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Trre6g04890 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Trre6g04890 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Trre6g04890 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04890 Trre-Chr6 51694386 51698385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04890 29 54 Calmodulin-binding Proteins AT2G22960 73.077 3.41e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04890 K16296 - gmx:100792006 647.121