Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04889 ATGCTGACACACAACCACCGCTACCACATGGCTTCTTCATTCTTCAACTTCAATTTCACCATCACTAATCTCATTCTGATACTACTATTATTACACCAACACTCCATAACCGTTTTTGTTGTTGCATTTACAGAGAACAACAACAGCACAGAAACTAGTCCACCTCCAACTCCGATTCCCGAAGACGCAACCACCATTCCTCAACGCACCTTCACACCATTCAAACCAAGCGTAGCTATTGTCATTAGCGTTTTCACTGTCCTCTTTTCAGTCACTTTTCTTCTTCTTCTCTACATCAAACACATCAACAACACAACCAACGCTGAAACAATTAATATCGAAAGTAGTAGCTACGGCGGCGGTGGAGGAATCTCGTCTTTCAGCGCCGGAAGAAAAAACTCCGGCGTTGACCGTTCCGTAGTTGAATCGTTACCGATTTTCAAATTCGGATCACTTACAGGTCAAAAAGACGGTCTAGATTGCGCCGTTTGTCTCTCGAAATTCGAATCTTCAGAAGTTTTACGGTTATTGCCGAAATGTAAACACGCTTTTCACGTTGAATGTGTTGATACTTGGTTAGATGCACATTCAACTTGTCCTCTTTGTCGTTACAGAGTCGATCCTGAAGATATTCTTCTCGTAATGGAAAATTCAACATCATCAGTATCACGCGATTCACGCCAGATTCAGAATCAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGAATGTGTTGTTGAAATTGAAAGAGGAACAATGACGAGAAACGAAATTGCAGAGTATTATAGAAAGAGGCATTCATCGGTAGGAGAAAAGGAATGGGAACGAGAACGAGAAAGAAGGAAAACGGCGTCGTTTAGATGGTCATTGGATAGTTCTAGAAAGAAGAACGATAGTTCAGTTGGAATTGGGCTTGGTTGTTTTGTTGGGCCAGGGCCCAGAAAAGATGGAATGTTGTTAACAAAAGAAGAGATCACAGAGAGGAATAGCGTGGACCGGAGAAGAAGGTTGGAGCATAGGATTATTGTGTCACCTTCAGTTCCAGTAACAAATATAAGAAGTGGGCTCCACAAGAATCAACGGTGGAGTGATGTACAACCGTGTGATCTGTTGTATCTAACGTCAGAGATGATGATAATGAGTGAGTCACGGAGAGTGATGAAGAAGAATATGAACAATAGAAATAGTAATGATAGTTGTTGGAATGGCAGAGGAGAAATTAATTCGAGAAGTGTGTCTGAAATCACGGGATTCAATAGGTTTCAAACCAACAATACTACCAAGCAATAA 1290 0.4109 MLTHNHRYHMASSFFNFNFTITNLILILLLLHQHSITVFVVAFTENNNSTETSPPPTPIPEDATTIPQRTFTPFKPSVAIVISVFTVLFSVTFLLLLYIKHINNTTNAETINIESSSYGGGGGISSFSAGRKNSGVDRSVVESLPIFKFGSLTGQKDGLDCAVCLSKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVMENSTSSVSRDSRQIQNQKEEEEEEEEVECVVEIERGTMTRNEIAEYYRKRHSSVGEKEWERERERRKTASFRWSLDSSRKKNDSSVGIGLGCFVGPGPRKDGMLLTKEEITERNSVDRRRRLEHRIIVSPSVPVTNIRSGLHKNQRWSDVQPCDLLYLTSEMMIMSESRRVMKKNMNNRNSNDSCWNGRGEINSRSVSEITGFNRFQTNNTTKQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04889 429 SMART ring_2 161 202 IPR001841 -
Trre6g04889 429 FunFam RING-H2 finger protein ATL43 136 210 - -
Trre6g04889 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 47 423 - -
Trre6g04889 429 Coils Coil 222 242 - -
Trre6g04889 429 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Trre6g04889 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 210 IPR013083 -
Trre6g04889 429 Pfam Ring finger domain 160 203 IPR001841 -
Trre6g04889 429 SUPERFAMILY RING/U-box 141 208 - -
Trre6g04889 429 CDD RING-H2_EL5-like 160 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04889 Trre-Chr6 51687966 51689255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04889 76 420 C3H Transcription Factor Family AT5G05810 45.983 2.76e-74 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04889 K19041 - twl:119999828 288.115