Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04884 ATGAACACAAGCAAAGCCGAAGCAGAACGGTTACTAGAGATCGGAGAAGAACTTTTACAAAAACGCGATCTAAAAGGTTCAAGAGAAATAGCAATTCTCGTTCAAGAAACCGAACCTCTTCTAGAAGGTTCCGATCAGATCTTAGCAATTGTCGATGTTCTCGAAGCAGCAGAAAAGCCTCTGAATCTCAACAATCATCATCTCGATTGGTACGCAATTCTTCAAATCAATCGAAATTCACAAGATCTTAATCTTATCAAGAAACAGTATCGTACTCTCGCTCTTCTTCTTCATCCTGATAAAAATCCTTTTTCGTTTTCTGAACTTGCTTTCAAACTTGTTTCTGATGCTTGGGCCGTTTTATCTGATCCGGCCCAAAAGGCCCAATATGATAAAGGGTTTGAATTTGAATTTGAAGGTGGTAATAACGGTTTGGTGAATTCGAATGCGAATGGAAATGGAAATAAATGTGATAAATCTTTTCATGGTGTTTCGATTCCTTGTCTTCCACCGATTGTGCCGGGACAAGAAGCTTATAATGTTTCTTGGGGAATGTTTCCGATGGGTTTTGTTTTTGAAAGTTTAGAAAATGGTGGTGGTGGTGATGTTGTTGGTTCTGGTACGAGGAAGTGA 633 0.3918 MNTSKAEAERLLEIGEELLQKRDLKGSREIAILVQETEPLLEGSDQILAIVDVLEAAEKPLNLNNHHLDWYAILQINRNSQDLNLIKKQYRTLALLLHPDKNPFSFSELAFKLVSDAWAVLSDPAQKAQYDKGFEFEFEGGNNGLVNSNANGNGNKCDKSFHGVSIPCLPPIVPGQEAYNVSWGMFPMGFVFESLENGGGGDVVGSGTRK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04884 210 SMART dnaj_3 68 126 IPR001623 -
Trre6g04884 210 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 156 195 - -
Trre6g04884 210 Pfam DnaJ domain 69 131 IPR001623 -
Trre6g04884 210 PRINTS DnaJ domain signature 90 105 IPR001623 -
Trre6g04884 210 PRINTS DnaJ domain signature 126 145 IPR001623 -
Trre6g04884 210 PRINTS DnaJ domain signature 71 89 IPR001623 -
Trre6g04884 210 PRINTS DnaJ domain signature 106 126 IPR001623 -
Trre6g04884 210 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Trre6g04884 210 Gene3D DnaJ domain 55 148 IPR036869 -
Trre6g04884 210 SUPERFAMILY Chaperone J-domain 67 143 IPR036869 -
Trre6g04884 210 CDD DnaJ 69 123 IPR001623 -
Trre6g04884 210 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04884 Trre-Chr6 51660131 51660847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04884 2 204 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 45.148 1.45e-58 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04884 - - tpra:123915791 337.421