Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04882 ATGTTGCATGATCTTATACTTCAGTTCAATTCAACTATGGCATATTCGGGATCAATTCGATTGTTTCATGACATTAAGCAATACAGTAGTAATAATGGAAGCTGTAGTTTTTGCCATAAACTCAATTCCGGTAATCGATTATGTTTTGTCGCCTTCAATCATCCGTGGCATAGTTTGAGGATGGATTCTTCAGCACTCATCTTTTCCAGATTACATGTCCAAATTAAGCCTGTACCTTCTAGATGTAATGTTTTGCTGTGCCGATCTGCTCTTGTACCGGCTGGAGGGTGTGAGGCTCCACTGATGAAAGTGGCTACTGTTTCTTTGTCAAGGTCATATACTGCTATATCAGGAGCACCAATTGTGCTTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCCGCCTTTGGTCTTGAACCTCTCATGCGGCTTTGTAGGGCTCTATTTCTCCAAGAATGGAATGATAAAAGTTGGAAGAAAAGTAATTCACGTTATATAATGACATCTTATTTTCAACCTTTGCTGCTGTGGACTGGGGTAATGCTCATCTGCAGGTGTTTAGATCCACTAGTCCTACAATCAGAAACCCGTCCGGTTATAAAGCAAAGGCTGTTGAGTTTCGTCAGATCTTTTTCAACTGTGTTTACACTTGCTTATTGTTCTTCAAGCTTTGTTCGACAAGCACAAAACTTCTATAAGGAGACAAATGACACCAATAATGAAAGAAAAATGAGCATTGATCTTATCGGGAAAGCTGTATATACTGCAATATGGGTTGCTGCCGTGTCATTGTTCATGGAGTTGCTTGGTCTCTCCACACAGAAGTGGTTGACTGCTGGTGGGATGGGTACAATATTGCTTTCGCTTGCAGGTCGTGAGATATTCACAAACTTCCTTTCAAGTATGATGATTCATGCAACTCGACCATTTGTTGTGAACGAGCGAATTAAAACAAAGATTAAAGGATATGAGGTTTCTGGTAGGGTTGAGCATGTAGGTTGGTGGTCACCAACAATAGTTAGAGGTGCTGATTGCGAAGCTGTTCACATTCCTAATCATAAATTGAGTGTAAATGTTGTGAGAAATCTTAGTAAGAAAACTCATTGGCGCATCAAAACTCACCTGGCTATCAGTCACTTGGATATTAACAAGATTAATATCATCATAGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTTTAGTAGAGCAGAAAAAATTGCACAGACGAGTTTTTCTGGAGGATGTCAATCCAGAAAATCAGGCTCTTATGATATTAGTATCTTGCTTTGTTAAAACTTCACATTCCGAAGATTACCTCCGTGTTAAGGAGGATATTCTCTTGGATTTTCTTAAAGTCATCAGTCATCATGGAGCTCGGCTAGCCACACCCATTCGCACAATTCAGAAGATGTACGGTGATCGTGATTTAGAAACTGATCCATTTGAAGATGCCATTTTCACTCGTTCCAACACAAAGGGAAACCGCTCTATGCCATTCATAGATCCACCCTATAAAGTTAAGCCTTCAACTCAATCAATTATTGTAAACGGTGAAAAAGATGCCAAGATTCGTGAAACTTTATCTGGTTTCAAAGACGAAGGTGAAAAAATTATCGCGACATGGACCCCTTCTTCCAGTGCAAAGCCCCAGGATAAATTCAAGTCATCATCTCAAGCCAAGACCCAGAGTGTGGGTTCTGATAACTCGGTCCAAAAGGCCACTAAATCGGGAACAACACCCCAAATTTTGTCATCATCCAATGAAACTTCACCGTCAAAGAAAGATGAAGAAAAATGA 1803 0.4021 MLHDLILQFNSTMAYSGSIRLFHDIKQYSSNNGSCSFCHKLNSGNRLCFVAFNHPWHSLRMDSSALIFSRLHVQIKPVPSRCNVLLCRSALVPAGGCEAPLMKVATVSLSRSYTAISGAPIVLQLIPALGIIGFAAFGLEPLMRLCRALFLQEWNDKSWKKSNSRYIMTSYFQPLLLWTGVMLICRCLDPLVLQSETRPVIKQRLLSFVRSFSTVFTLAYCSSSFVRQAQNFYKETNDTNNERKMSIDLIGKAVYTAIWVAAVSLFMELLGLSTQKWLTAGGMGTILLSLAGREIFTNFLSSMMIHATRPFVVNERIKTKIKGYEVSGRVEHVGWWSPTIVRGADCEAVHIPNHKLSVNVVRNLSKKTHWRIKTHLAISHLDINKINIIIADMRKVLAKNPLVEQKKLHRRVFLEDVNPENQALMILVSCFVKTSHSEDYLRVKEDILLDFLKVISHHGARLATPIRTIQKMYGDRDLETDPFEDAIFTRSNTKGNRSMPFIDPPYKVKPSTQSIIVNGEKDAKIRETLSGFKDEGEKIIATWTPSSSAKPQDKFKSSSQAKTQSVGSDNSVQKATKSGTTPQILSSSNETSPSKKDEEK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04882 600 MobiDBLite consensus disorder prediction 542 591 - -
Trre6g04882 600 Gene3D - 203 309 - -
Trre6g04882 600 SUPERFAMILY Sm-like ribonucleoproteins 295 365 IPR010920 -
Trre6g04882 600 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 13 592 IPR045042 -
Trre6g04882 600 Pfam Mechanosensitive ion channel 252 461 IPR006685 GO:0016020|GO:0055085
Trre6g04882 600 MobiDBLite consensus disorder prediction 542 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04882 Trre-Chr6 51653588 51659093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04882 13 514 Mechanosensitive Ion Channel Family AT1G58200 56.461 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04882 K22047 - mtr:11434686 1023.46