Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04880 ATGATATCCTGCTATGTGAAAACTTCACATTTTGAGGAGTACCTCTATGTTAAGGAGGCAATCCTTTTGGATTTTCTCAAATTTATCAGTCATCATCGAGCCCCGTTAACAACTCCCATCTGGCTAGTTGATGAACCTGTGAACATGGATTCTGATAGTTCAGTTGAGAAGACCTCAAAAACTATGCAGCCTAAAAAAGAAAGTTCAGGGAATGTAGGAAAGGGAAGTACAACTTCTGCATCTAAAAATCTTGCTCAAAGTGCTGTATCTGAAACTTTGCCTGTTACTTCCCATGAGTCTGGAAGGGGAGAGACTACTTCTGCTACTTTGTCATAG 336 0.4018 MISCYVKTSHFEEYLYVKEAILLDFLKFISHHRAPLTTPIWLVDEPVNMDSDSSVEKTSKTMQPKKESSGNVGKGSTTSASKNLAQSAVSETLPVTSHESGRGETTSATLS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04880 111 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 78 IPR045042 -
Trre6g04880 111 MobiDBLite consensus disorder prediction 52 111 - -
Trre6g04880 111 MobiDBLite consensus disorder prediction 50 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04880 Trre-Chr6 51645198 51646342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04880 1 58 Mechanosensitive Ion Channel Family AT5G10490 60.345 5.18e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04880 K22047 - han:110891045 71.2478