Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04879 ATGGTGTATCCAGGTTCAATGCAATTTTCTCCTGATGTTAGGCTCAAAAGTAATAATAATGGACCTCGTAGTTTCCAGCATCATAATCCGGTGCTTATTGGTCGATTACATTTAGTCACCATGAATCTTTTACCGCGTACTTTGAAGCGAGATTCTTTGGCACTCCATTTTCTGAGTGGAGTACATGCTCCAATAAGGCACACACCTTCCAGATGCAGTGTTTTTGTATGTCGGTCTGCCATGCTACCGGGTGGAGGGAATGGGACTGCCCTTGTGAAATCTGCTAGTGTTTTTTTAACAAGGTCATATGATTCTTTACTTGGAAACCCTATTTTCCTTCGATTGATTCCAGCCCTTGGTATTATTGCCTTTGCTGTTTATGGTATTGAGCCACTCCTTCGTCTCAGCAGGATTCTATTTTTTCAAAGGCCTGATAGTAGTTGGAAGAAAAGTAGTTCGCGATATGTTATGACATCTTATTTTCAGCCATTATTATTGTGGACTGGGGCAATGCTCATATGCAGGGCATTAGATCCAATTGTCCTGCCATCTCAGACTAGCCAGGTCGTGAAGCAACGACTGCTTAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTGATTCAACAAGCTCAAAAATTCTTTATGGAGGCATATGATTCAAGTGATACAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAATATACACTGCTGTATGGGTTGCTGCGGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGAGGTTTGGGCACAGTATTGCTCACTCTTGCCGGTCGTGAGATATTTACGAACTTCTTGTCAAGTATAATGATCCACGCAACTCGGCCATTTGTATTGAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGCATGTGGGCTGGTGGTCGCCAACTATTATTAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACCGTCAATGTTGTAAGAAATTTGACTCAGAAATCTCATTGGCGCATCAAGAGTTACATTTCAATTAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGGCTAAAATTCCTCAAGTGGAGCAGCAGAGATTGCACAGAAGAGTCTTTTTGGAAGACATCACTCCTGAAAATCAAGCTCTAAAGATATTGATATCTTGCTTTGTTAAAACTTCACATTTTGAGGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTGAGTCATCATCGAGCCCGATTAGCCACTCCCATCCGCACTTTTCAGAAAGTATACAGTGAGCCTGCATCGGAAAATATTCCTTTTGGGGATACCATTTTCACTCGATCTAGAGCAGCAGTAAATCGCCCATTACTGATAGAACCACAATATAAAGTTAACGGTGAAGATAAAGTTAAGCCATCAACTCGTTCAACTCGTGCAAATGAGGAAAAAGATGCCAAGATTGATGAAACTGCATCATCTGATTCCAAAGGTGATGACAATTTGGCAGCAACATCAACCTCTCCACCCGGTGTAAACTCCAAAGATAAATCCAAGTCAAGTTCTGATGCCCAAATCCAGAACACGGGTTCTGATAGTTCAGTGGAGAAGACCTCCAAAACCATGCAGCCTAAAAAAGAAAGTGCAGGGGATGCAGGAAAGGGAAGCACAACTCCTGCATCTAAAAATCTTGCTCAAAGTGCTGTTTCTGAAACTTCGCCCGTTACTTCCCATGAGTCTGGCAGGGGAGAGACTGCTTCTGCTACTTCTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCAGTGCCGCCATCATCATTACGGCCTCCCTTAGAAGAGAATATTCTTCTTGGGGTTGCACTTGAAGGCTCAAAACGAACTCTTCCAATTGAGGAAGAAACGAGTCCATCTCCTAACTTGGCCGAGTCACAAGAGTTTGCTGTCCAACGGAATGGGAATGGACCTCCTGCTAACAAAGATAATGGTCCGATGTCTTCATTTCCAAATGCTAAGCAGAATGACTAG 2118 0.4212 MVYPGSMQFSPDVRLKSNNNGPRSFQHHNPVLIGRLHLVTMNLLPRTLKRDSLALHFLSGVHAPIRHTPSRCSVFVCRSAMLPGGGNGTALVKSASVFLTRSYDSLLGNPIFLRLIPALGIIAFAVYGIEPLLRLSRILFFQRPDSSWKKSSSRYVMTSYFQPLLLWTGAMLICRALDPIVLPSQTSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFMEAYDSSDTRNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYISISHLDVNKINNIVADMRKVLAKIPQVEQQRLHRRVFLEDITPENQALKILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTFQKVYSEPASENIPFGDTIFTRSRAAVNRPLLIEPQYKVNGEDKVKPSTRSTRANEEKDAKIDETASSDSKGDDNLAATSTSPPGVNSKDKSKSSSDAQIQNTGSDSSVEKTSKTMQPKKESAGDAGKGSTTPASKNLAQSAVSETSPVTSHESGRGETASATSSQSKQDEEKSSVPPSSLRPPLEENILLGVALEGSKRTLPIEEETSPSPNLAESQEFAVQRNGNGPPANKDNGPMSSFPNAKQND 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04879 705 MobiDBLite consensus disorder prediction 528 569 - -
Trre6g04879 705 SUPERFAMILY Sm-like ribonucleoproteins 284 354 IPR010920 -
Trre6g04879 705 MobiDBLite consensus disorder prediction 496 527 - -
Trre6g04879 705 MobiDBLite consensus disorder prediction 661 705 - -
Trre6g04879 705 MobiDBLite consensus disorder prediction 495 705 - -
Trre6g04879 705 Gene3D - 196 298 - -
Trre6g04879 705 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 3 680 IPR045042 -
Trre6g04879 705 MobiDBLite consensus disorder prediction 585 633 - -
Trre6g04879 705 Pfam Mechanosensitive ion channel 241 448 IPR006685 GO:0016020|GO:0055085
Trre6g04879 705 Gene3D - 300 355 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04879 Trre-Chr6 51635663 51643637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04879 27 679 Mechanosensitive Ion Channel Family AT1G58200 55.456 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04879 K22047 - gmx:100796022 1056.2