Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04878 ATGAACTTGTGCTTCAAGTCTTCAATTTCAACAATGGTGTATCCAGGTTCAATGCAATTTTCTCCTGATGTTAGGCTCAAAAGTAATAATAATGGACCTCGTAGTTTCCAGCATCATAATCCGGTGCTTATTGGTCGATTACATTTAGTCACCATGAATCTTTTACCGCGTACTTTGAAGCGAGATTCTTTGGCACTCCATTTTCTGAGTGGAGTACATGCTCCAATAAGGCACACACCTTCCAGATGCAGTGTTTTTGTATGTCGGTCTGCCATGCTACCGGGTGGAGGGAATGGGACTGCCCTTGTGAAATCTGCTAGTGTTTTTTTAACAAGGTCATATGATTCTTTACTTGGAAACCCTATTTTCCTTCGATTGATTCCAGCCCTTGGTATTATTGCCTTTGCTGTTTATGGTATTGAGCCACTCCTTCGTCTCAGCAGGATTCTATTTTTTCAAAGGCCTGATAGTAGTTGGAAGAAAAGTAGTTCGCGATATGTTATGACATCTTATTTTCAGCCATTATTATTGTGGACTGGGGCAATGCTCATATGCAGGGCATTAGATCCAATTGTCCTGCCATCTCAGACTAGCCAGGTCGTGAAGCAACGACTGCTTAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTGATTCAACAAGCTCAAAAATTCTTTATGGAGGCATATGATTCAAGTGATACAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAATATACACTGCTGTATGGGTTGCTGCGGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGAGGTTTGGGCACAGTATTGCTCACTCTTGCCGGTCGTGAGATATTTACGAACTTCTTGTCAAGTATAATGATCCACGCAACTCGGCCATTTGTATTGAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGCATGTGGGCTGGTGGTCGCCAACTATTATTAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACCGTCAATGTTGTAAGAAATTTGACTCAGAAATCTCATTGGCGCATCAAGAGTTACATTTCAATTAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGGCTAAAATTCCTCAAGTGGAGCAGCAGAGATTGCACAGAAGAGTCTTTTTGGAAGACATCACTCCTGAAAATCAAGCTCTAAAGATATTGATATCTTGCTTTGTTAAAACTTCACATTTTGAGGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTGAGTCATCATCGAGCCCGATTAGCCACTCCCATCCGCACTTTTCAGAAAGTATACAGTGAGCCTGCATCGGAAAATATTCCTTTTGGGGATACCATTTTCACTCGATCTAGAGCAGCAGTAAATCGCCCATTACTGATAGAACCACAATATAAAGTTAACGGTGAAGATAAAGTTAAGCCATCAACTCGTTCAACTCGTGCAAATGAGGAAAAAGATGCCAAGATTGATGAAACTGCATCATCTGATTCCAAAGGTGATGACAATTTGGCAGCAACATCAACCTCTCCACCCGGTGTAAACTCCAAAGATAAATCCAAGTCAAGTTCTGATGCCCAAATCCAGAACACGGGTTCTGATAGTTCAGTGGAGAAGACCTCCAAAACCATGCAGCCTAAAAAAGAAAGTGCAGGGGATGCAGGAAAGGGAAGCACAACTCCTGCATCTAAAAATCTTGCTCAAAGTGCTGTTTCTGAAACTTCGCCCGTTACTTCCCATGAGTCTGGCAGGGGAGAGACTGCTTCTGCTACTTCTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCAGTGCCGCCATCATCATTACGGCCTCCCTTAGAAGAGAATATTCTTCTTGGGGTTGCACTTGAAGGCTCAAAACGAACTCTTCCAATTGAGGAAGAAACGAGTCCATCTCCTAACTTGGCCGAGTCACAAGAGTTTGCTGTCCAACGGAATGGGAATGGACCTCCTGCTAACAAAGATAATGGTCCGATGTCTTCATTTCCAAATGCTAAGCAGAATGACTAG 2151 0.4198 MNLCFKSSISTMVYPGSMQFSPDVRLKSNNNGPRSFQHHNPVLIGRLHLVTMNLLPRTLKRDSLALHFLSGVHAPIRHTPSRCSVFVCRSAMLPGGGNGTALVKSASVFLTRSYDSLLGNPIFLRLIPALGIIAFAVYGIEPLLRLSRILFFQRPDSSWKKSSSRYVMTSYFQPLLLWTGAMLICRALDPIVLPSQTSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFMEAYDSSDTRNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYISISHLDVNKINNIVADMRKVLAKIPQVEQQRLHRRVFLEDITPENQALKILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTFQKVYSEPASENIPFGDTIFTRSRAAVNRPLLIEPQYKVNGEDKVKPSTRSTRANEEKDAKIDETASSDSKGDDNLAATSTSPPGVNSKDKSKSSSDAQIQNTGSDSSVEKTSKTMQPKKESAGDAGKGSTTPASKNLAQSAVSETSPVTSHESGRGETASATSSQSKQDEEKSSVPPSSLRPPLEENILLGVALEGSKRTLPIEEETSPSPNLAESQEFAVQRNGNGPPANKDNGPMSSFPNAKQND 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04878 716 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 14 691 IPR045042 -
Trre6g04878 716 MobiDBLite consensus disorder prediction 596 644 - -
Trre6g04878 716 Gene3D - 311 366 IPR023408 -
Trre6g04878 716 Gene3D - 207 309 - -
Trre6g04878 716 MobiDBLite consensus disorder prediction 672 716 - -
Trre6g04878 716 MobiDBLite consensus disorder prediction 539 580 - -
Trre6g04878 716 Pfam Mechanosensitive ion channel 252 459 IPR006685 GO:0016020|GO:0055085
Trre6g04878 716 MobiDBLite consensus disorder prediction 506 716 - -
Trre6g04878 716 MobiDBLite consensus disorder prediction 507 538 - -
Trre6g04878 716 SUPERFAMILY Sm-like ribonucleoproteins 295 365 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04878 Trre-Chr6 51635630 51643637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04878 38 690 Mechanosensitive Ion Channel Family AT1G58200 55.456 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04878 K22047 - gmx:100796022 1056.2