Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04864 ATGCTAGAAAACAAGCCGAAGAAACTTACCTTCTCTGAAATCGACGCTGCTACTCTCACACGACGGTATGATGCAGCAACTGTGTTGACGGTGCTTCAGGAATTAACACATTACAATGAGTCAAAGTTTGATTGGAATGAATTGGTTAAGAAAACTACTTCTGGTATTTCTAATGCCAGAGAATATCAGATGCTATGGCGTCACTTGGCGTATCGATATAACTTGCCTGAGAATTTCGATGAAGAAGGGGATGATCCTATGGATGATGATAGTGACATAGATTGCGAGCTGGAATCATTTCCTCCTACAAGTGGGGAATCTACATTAGAGCCCTCAGCATGTGTGAAGGTGATTATTGCTTCGCGTACGCTTAGTGAGGCTACCCCTAGTAGCTCAACAATTGAGGCTCCATTGACTGTAAATTTTCCAGTTTGCCATTCATCTAGAACTCCAAAGGAAATTTCACTGCCCTCTAATTTGATGGAACAGACAAGCATTATGTTTCCAGTTTTTGTTAATAGACAGACACTGCCAACTGTATCTTCAACAGATGCTTTAGAAACCAAGGGAACAGTTGGTGGCACCATGGCTTCCAAAAGGAAAAGAAAAGGATGGTCAGAGGAAGAGGACAATGAGCTACGTGCTGCTGTTCAGAGATGGGGTGAAGGGAACTGGGCAACCATGGCAAAAGGAGACCACTTTTCTATTAAGAGAACCGCAACACAATTATCTCAGAGGTGGAGTGCTTTACGGAAGAAAGATGGCAGTGCCAATTCAAGTGCCAATCCAGTAACTCCCCCCGTGACCACCAACACGCAGTATACTGCTGAACAGTTGGCAACTCGTCACTCCTTAAATTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGAATGACTGATCCTGGCAGGACATCCACATCAATTAAAAATCAAGTGCAGAGTCGTAATACAACGCAAGTCTCCACAGTTCGTAGTTCTGTACCACCTCAGGCGCAAGTCTCCACAGTTCGTAGTTCTGTACCACCTCAGGCGCAAGTCTCCACAGTTCGTAGTTCTGTACCACCTCAGGCGCAAGTCTCCACTGTTCGTAGTTCTGTACCACCTCAGACGCAAGTCTCCACAGTTCGCAGTTCAGTACCACCTCAGACGCAAGTCTCCACAGTTCGCAGTTCAGTACCACCTCAGACGCAAGTCTCCAACGTTCGCAATTCAGTACCACCTCAGACGCAAGTCTCCAACGTTCGCAGTTCAGTACCACCTCAGGCGCAAGTCTCCACAGTTCGCAGTTCGGTACCACCTCAGGCACAAGTCTCCACAGTTCGCAGTTCTGTACCACCTCAGGCACAAATCTCCACAGTTCGCAGTTCCGTACCACCTCAGGCGCAAGTCTCCACAGTTCGCAGTTCTGTACCACCTCAGGCGCAAATCTCCACAGTTCGCAGTTCTGTACCACCTCAGGCGCAAATCTCCACAGTTCGCAGTTCTGTACCACCGCAGATGCAAGTCTCCACAGTTCGCAGTTCTGTACCACCTCAGACACAAAACTCTACAGCTCGCAGTTCTGTACCACCTCAGACGCAAGTCTCCACAGTTCGCAGATCCATACCACCTCAGACACCAGTTTCCACAGTTCGCAGTTCTGTGCCAACTCAGACGCAAGTCTCCACTGTTCGCAGTTCTATACCAGCTCAGCGTCCATCTCAACAAGCTTGTGGTTCCCCTGCAAAACCCAAATTAGCCTCTGAAAATCCAGTCTCAAAGAGTAATGCAATTCCAGCTTGCGAGTTAAAACCTGCCATTGTTCATTCTGGAGCACAAACTGTTTCACGATCAAATGCTATGCCACAATTGAAGGTTTCTCAAGCGAAAAATGTGGTACATACTGTGCCTGCTGGTAGTTCTTTGACAAAGACACCCATTTCTACTGGTTTGCCTTCTGACCAAAAGGTTCATTCAAATGTGCCTGCTGGTAGTTCTTTGACGAAGACAACCATTTCTGTTGGTTTGGCTTCTGACCAAAAGGAACATGTTACCTCTGTAAAAGAAGGGGAAAAAAGAGTTTCTGATCCTGGCTCCGCACCAAAAGAGGTGAAAGAAGAGGAAGCTTCGACATTAAATACTCAGGGCAATGTAGATAGCAAACTGGATAAGGCGAAGCTAGATTTAGATAAAGCCAAAAGCATGCCCAATGAGAAAGTTTTGGAACATAAAGCAGTGTCACATAATTCAGGAGAGTGTGAAGAGCAAGTAAGTGTTAAGAATTCAAATTGTACCCCCAAGAAGGCCACTGACAATATAAATGGCAATTTGAATAAGGAAAGTCAAGTTCTAAATCAAGACAAGAAGACAGTTTCTATTACCGGAAGCTCTAACCATCAAAACGTGAATGAGAAACTCGTAAATTTGCCAAAGCAAGGTGAATGCCGTCAAGGTTTGGAAGTGCCATGA 2457 0.4571 MLENKPKKLTFSEIDAATLTRRYDAATVLTVLQELTHYNESKFDWNELVKKTTSGISNAREYQMLWRHLAYRYNLPENFDEEGDDPMDDDSDIDCELESFPPTSGESTLEPSACVKVIIASRTLSEATPSSSTIEAPLTVNFPVCHSSRTPKEISLPSNLMEQTSIMFPVFVNRQTLPTVSSTDALETKGTVGGTMASKRKRKGWSEEEDNELRAAVQRWGEGNWATMAKGDHFSIKRTATQLSQRWSALRKKDGSANSSANPVTPPVTTNTQYTAEQLATRHSLNLALDMPFKKLTAPGMTDPGRTSTSIKNQVQSRNTTQVSTVRSSVPPQAQVSTVRSSVPPQAQVSTVRSSVPPQAQVSTVRSSVPPQTQVSTVRSSVPPQTQVSTVRSSVPPQTQVSNVRNSVPPQTQVSNVRSSVPPQAQVSTVRSSVPPQAQVSTVRSSVPPQAQISTVRSSVPPQAQVSTVRSSVPPQAQISTVRSSVPPQAQISTVRSSVPPQMQVSTVRSSVPPQTQNSTARSSVPPQTQVSTVRRSIPPQTPVSTVRSSVPTQTQVSTVRSSIPAQRPSQQACGSPAKPKLASENPVSKSNAIPACELKPAIVHSGAQTVSRSNAMPQLKVSQAKNVVHTVPAGSSLTKTPISTGLPSDQKVHSNVPAGSSLTKTTISVGLASDQKEHVTSVKEGEKRVSDPGSAPKEVKEEEASTLNTQGNVDSKLDKAKLDLDKAKSMPNEKVLEHKAVSHNSGECEEQVSVKNSNCTPKKATDNINGNLNKESQVLNQDKKTVSITGSSNHQNVNEKLVNLPKQGECRQGLEVP 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04864 818 MobiDBLite consensus disorder prediction 633 662 - -
Trre6g04864 818 MobiDBLite consensus disorder prediction 678 705 - -
Trre6g04864 818 CDD SANT_TRF 205 252 - -
Trre6g04864 818 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 521 797 - -
Trre6g04864 818 MobiDBLite consensus disorder prediction 296 588 - -
Trre6g04864 818 MobiDBLite consensus disorder prediction 747 803 - -
Trre6g04864 818 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 255 IPR017930 -
Trre6g04864 818 MobiDBLite consensus disorder prediction 741 818 - -
Trre6g04864 818 SMART sant 201 253 IPR001005 -
Trre6g04864 818 SUPERFAMILY Homeodomain-like 200 253 IPR009057 -
Trre6g04864 818 MobiDBLite consensus disorder prediction 674 709 - -
Trre6g04864 818 Gene3D - 195 258 - -
Trre6g04864 818 ProSiteProfiles Myb-like domain profile. 197 251 IPR001005 -
Trre6g04864 818 Pfam Myb-like DNA-binding domain 202 247 IPR001005 -
Trre6g04864 818 MobiDBLite consensus disorder prediction 302 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04864 Trre-Chr6 51547547 51553609 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g04864 Myb_DNA-binding 4.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04864 - - tpra:123913998 1392.48