Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04852 ATGCACAAAGGAACAACAACAAATAGAGGACATGGAAGACAACTTTGGAAAGAGCGAGGATTGGATGAATCATCCAAAAAGCTATTAGATCACGATAAGGACAATATCGTCAATTCAATTAAATCTGGAAATGAAAGCGACACGCAAACCAAAAAGTCACTTTCGTTTTCTACTCCTCCAACAACTAAACATCACGACGACGTCGTTTTCTCCTCCGGCAAACACTCGCATTCCTCCGGCGATAACAGGTTCCGATTCAAACAAAAGCAAATAACGGCTTTCTGCGACTGGTTTATCGACAAAAAAAGAAATCACTCCGGTCACCATAATTATCATCACTTCCGCCGCCGATCGTCAATCTCCGACGATGATCACGACTTTAATCTTTCTCAGCCGGAGACAGCCGTTAAAGACACTGCAATCGACCGGAATTTTGATCGGCAGGTTTCGCTTCCGAGGTTATCAAGCGATAGTAGCTATGCAGGGAGTTTGTTTTCCAGTGACATCAAAGAGGAAACGCCGTTGTCTCAAGTCTCCACCATTACCACCGCTAGGCAGAAAGAGGAGGAAGACAACAAAGACGCGTTGGTTAAGAAGTGTAAAGAAAGCTACATCTTGCAGCTTATGTTAGCGAAGAGGTTGGCTTCTTTGGCAAGTCTTGTAACGAAACCGTTTCTCACTCATGGCACCGAAACTTGGGATGCTGAATCTGTTTCTTATCGTCTTTGGGTGAGTGGGTGTTTGTCGTATACAGACAAGATAACTGATGGATTTTACAACATATTGGGGATGAATCCATATCTGTGGGTGATGTGCAATGATGAGGAGGAAGGAAAGAGGATGCCTACTTTGATGGCACTTAAAGCCATTGAACCAGGCGAAACATCTATGGAGGTGGTGCTTGTTGATAGAGACGAAGATTCTCGTTTAAAAATGCTTCATGATAAAGCTCAGGAGTTGTATTGTTCTTTTGGGGACACCTTGGTGTTTGTTGAACAACTAGGAAAACTTGTTGCCATACATATGGGAGGTATATTCCCGGTGGAGGAAGGAGATCTCCACAAACGCTGGATGTTGGTTAGTAAGAGGTTGAGAAATTTTCACCAATGTGTTGTGCTTCCCATTGGTAGTCTATCTTCTGGGCTTTGTAGGCATCGAGCAATTCTCTTCAAGAGGTTGGCTGATTACATAGGTTTGCCTTGTCGCATAGCTCGTGGTTGCAAGTATTGCGCTGCAGATCACAGATCCTCTTGCCTAGTCAAGATTAAAGATGACAAGCAGCTTTTGAGGGAATACGTAGTCGACCTTGTTGGGGAACCAGGAAATGTACATGGTCCAGATTCCTCGATCAATGGAGCATATGCTTCTTCGATTCCTTCGCCGTTACAAATTTCTCATTTTATGGAATTACAATCAGGCTATATGGATGATGAACAAAATTCTCAACCACTTATTAGTTTCGACCAAAGATCTTTTAATCCTGAAACTCATCCTTATTCAGGTTGTGGACAGAATGATCAACAAGTTATGGAAGCTGATTTGTCGAAAGGTCATCAGGGTTCCGTCTGTGCTTCTGTTGATCAAACCTGTGAAATAACCAAACCAAATCTAATTCCTTTTGGTTTAAAAGAGAATGATGAGGAATGTGCGGTTCTAGGTTCAATTTTGCCTACCATTCATGAGAATGTTGCTAAAGTTTTTCCTGCCACTGAATCATCATTACATGAATATCCAAGGTTTAGTGAAGATACAGTTATGGTACAAGAAGCTTCCAACAATGAGATCATCGTAACCGGAGGTTCTGTAGTAAAAAGTATTTTCAAGCAATGTATACTTAGTTCCTCCTGCCAATCAGAAATCAAGCAGGTAGACAATAGAATTGAAAATCAGGACTACTTACCTGATGGGAGTATTCCAAGATATGTGAATGTTGAGCCATCGCTTGCAATGGACTGGCTTGAGATATCATGGGATGATTTACGGATTAAAGAGCGTGTTGGTGCTGGCTCATTTGGGACTGTGCACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAAGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAGGAGTTTTTGAGAGAGGTTGCAATAATGAAACGCGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAACAAGCCCAAATCTATCAATAGTTACAGAGTATTTGCCGAGGGGTAGTTTATACCGCCTGATACATAGGCCAGCATCTGGTGAAATTCTGGATAGTAGGAGAAGATTACGGATGGCTTTGGATGTGGCTAAAGGAATGAATTATCTCCATTGTCTGAAACCTCCAATCGTGCACTGGGATCTCAAATCACCAAACTTGTTAGTGGACAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTTATACCCTCAAAATCTGTTGCCGGAACACCCGAGTGGATGGCCCCAGAATTTCTTCGCGGAGAACCTTCAGATGAGAAATCAGACGTATTCAGTTTTGGAGTTATCCTGTGGGAGCTTGTGACCATGCAACAACCATGGAGTGGACTTAACCCTCCCCAGGTGGTCGGAGCTGTTGCTTTCCAGAATAGGAAGCTTGCTATCCCTCCAAACATATCCCCAGCATTGGCCTCCCTCATGGAATCTTGTTGGGCTAACGATCCTGCTCAGCGCCCATCTTTCAGTAGCATAATTGAGTCATTAAAGAAGCTGTTGAAGTCTCCAGCAGAGGTGATACAAATGGGTGATATGCACAAGCCATAA 2802 0.429 MHKGTTTNRGHGRQLWKERGLDESSKKLLDHDKDNIVNSIKSGNESDTQTKKSLSFSTPPTTKHHDDVVFSSGKHSHSSGDNRFRFKQKQITAFCDWFIDKKRNHSGHHNYHHFRRRSSISDDDHDFNLSQPETAVKDTAIDRNFDRQVSLPRLSSDSSYAGSLFSSDIKEETPLSQVSTITTARQKEEEDNKDALVKKCKESYILQLMLAKRLASLASLVTKPFLTHGTETWDAESVSYRLWVSGCLSYTDKITDGFYNILGMNPYLWVMCNDEEEGKRMPTLMALKAIEPGETSMEVVLVDRDEDSRLKMLHDKAQELYCSFGDTLVFVEQLGKLVAIHMGGIFPVEEGDLHKRWMLVSKRLRNFHQCVVLPIGSLSSGLCRHRAILFKRLADYIGLPCRIARGCKYCAADHRSSCLVKIKDDKQLLREYVVDLVGEPGNVHGPDSSINGAYASSIPSPLQISHFMELQSGYMDDEQNSQPLISFDQRSFNPETHPYSGCGQNDQQVMEADLSKGHQGSVCASVDQTCEITKPNLIPFGLKENDEECAVLGSILPTIHENVAKVFPATESSLHEYPRFSEDTVMVQEASNNEIIVTGGSVVKSIFKQCILSSSCQSEIKQVDNRIENQDYLPDGSIPRYVNVEPSLAMDWLEISWDDLRIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTTSPNLSIVTEYLPRGSLYRLIHRPASGEILDSRRRLRMALDVAKGMNYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSDEKSDVFSFGVILWELVTMQQPWSGLNPPQVVGAVAFQNRKLAIPPNISPALASLMESCWANDPAQRPSFSSIIESLKKLLKSPAEVIQMGDMHKP 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04852 933 PRINTS Tyrosine kinase catalytic domain signature 885 907 IPR001245 GO:0004672|GO:0006468
Trre6g04852 933 PRINTS Tyrosine kinase catalytic domain signature 775 793 IPR001245 GO:0004672|GO:0006468
Trre6g04852 933 PRINTS Tyrosine kinase catalytic domain signature 841 863 IPR001245 GO:0004672|GO:0006468
Trre6g04852 933 PRINTS Tyrosine kinase catalytic domain signature 734 747 IPR001245 GO:0004672|GO:0006468
Trre6g04852 933 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 209 919 - -
Trre6g04852 933 FunFam Serine/threonine-protein kinase isoform 1 650 738 - -
Trre6g04852 933 Gene3D Phosphorylase Kinase; domain 1 653 737 - -
Trre6g04852 933 MobiDBLite consensus disorder prediction 12 38 - -
Trre6g04852 933 MobiDBLite consensus disorder prediction 1 81 - -
Trre6g04852 933 Pfam Ethylene-responsive protein kinase Le-CTR1 235 443 - -
Trre6g04852 933 ProSiteProfiles Protein kinase domain profile. 660 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04852 933 MobiDBLite consensus disorder prediction 39 65 - -
Trre6g04852 933 MobiDBLite consensus disorder prediction 67 81 - -
Trre6g04852 933 ProSitePatterns Protein kinases ATP-binding region signature. 666 687 IPR017441 GO:0005524
Trre6g04852 933 Gene3D Transferase(Phosphotransferase) domain 1 739 926 - -
Trre6g04852 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Trre6g04852 933 CDD STKc_MAP3K-like 666 914 - -
Trre6g04852 933 SMART serkin_6 660 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04852 933 Pfam Protein tyrosine and serine/threonine kinase 660 914 IPR001245 GO:0004672|GO:0006468
Trre6g04852 933 FunFam Serine/threonine-protein kinase CTR1 739 924 - -
Trre6g04852 933 SUPERFAMILY Protein kinase-like (PK-like) 635 913 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04852 Trre-Chr6 51430784 51439849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04852 18 928 MAP Kinase Kinase Kinase AT4G24480 53.799 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre6g04852 PK_Tyr_Ser-Thr 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04852 - - gmx:100808435 1363.98