LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g04848	ATGGCGGAGCAACCATTTCCGATCGAGAATCCAGCAATTCCAATTGTTGAAGAAGAAGACGACGGCGACGAGGACTACACTGGCGGTGATGAAACTATGGATGAATTGGAAGAGGAAACACCAAATGTCAATTCAGTGATTGTTCCAGCTGGTGCGAATCACGCCGACGTCGTTTTGCCTCCAACGCGTACTGGTGAACTCACTCTTTCTTTTGAAGGCCAGGTTTATGTCTTCCACGATGTCACACCTCAGAAGGTTCAAGCTGTTTTGCTGCTTTTGGGAGGACGAGATGCACCGGCAGGCAGGCCTAAAGTTGAACAACCATTTGATCAAAGTATCAAGAGCATGGGCGATATTGCAAGGCATCCAAAGCTTTCACAAAGAATAGCCTCCTTGGTCAGGTATCGCGAAAAACGCAAGGATAGATGTTTTGAAAAGAAAATTAGATACACCGTGAGAAAAGAAGTGGCAGAAAGGATGCATCGGGAAAAGGGGCATTTTGCATCCTTGAAGCAAAGTCCTGGTTCATGTGCCGGTCAAGATGGCACTCCAAATCCTGAATCTTTACGTAAATGTACACATTGTGGAGTCAGCGAAAAGGATACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGAACTTTATGTAATGCATGCGGCCTCATGTGGGCCAACAAGGGGACACTCAGAGATCTCAGGAAGGGGGGAAGAAATCTTTCTGTTGAGCAAAGTGGTCTGGACCGTTCTATTGATGTCAAGCCGACTGTTCTTGAAGGGGAATTGTCTCTCATTGAAAATGAACAAGGTATTTTGGAAAACCCTTCCAAGGCCATTGCTGTTGAAGGTTCAAATAATCATGCATTAAATCCAAGTGATGAGGAGTTGCCTGAATCTGCAGAACACCTTACAAACACACTGCCATTGGTAATTGATCATTCTTCGGAAAATGAACAGGAACCCTTGGTTGAGCTTTCGAATCCTTCGGATACAGGAACGTCTAATCCTTCAGATACAGATGTTGACATTCCCGGAAACTTTGATTAG	1044	0.455	MAEQPFPIENPAIPIVEEEDDGDEDYTGGDETMDELEEETPNVNSVIVPAGANHADVVLPPTRTGELTLSFEGQVYVFHDVTPQKVQAVLLLLGGRDAPAGRPKVEQPFDQSIKSMGDIARHPKLSQRIASLVRYREKRKDRCFEKKIRYTVRKEVAERMHREKGHFASLKQSPGSCAGQDGTPNPESLRKCTHCGVSEKDTPAMRRGPAGPRTLCNACGLMWANKGTLRDLRKGGRNLSVEQSGLDRSIDVKPTVLEGELSLIENEQGILENPSKAIAVEGSNNHALNPSDEELPESAEHLTNTLPLVIDHSSENEQEPLVELSNPSDTGTSNPSDTDVDIPGNFD	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g04848	347	Pfam	GATA zinc finger	192	228	IPR000679	GO:0006355\|GO:0043565
	Trre6g04848	347	ProSitePatterns	GATA-type zinc finger domain.	192	219	IPR000679	GO:0006355\|GO:0043565
	Trre6g04848	347	MobiDBLite	consensus disorder prediction	14	38	-	-
	Trre6g04848	347	MobiDBLite	consensus disorder prediction	319	340	-	-
	Trre6g04848	347	SMART	tify_2	60	95	IPR010399	-
	Trre6g04848	347	ProSiteProfiles	CCT domain profile.	128	170	IPR010402	GO:0005515
	Trre6g04848	347	MobiDBLite	consensus disorder prediction	173	187	-	-
	Trre6g04848	347	Gene3D	-	185	244	IPR013088	GO:0006355\|GO:0008270
	Trre6g04848	347	PANTHER	GATA TRANSCRIPTION FACTOR 28	18	332	IPR045280	GO:0006355
	Trre6g04848	347	ProSiteProfiles	Tify domain profile.	60	95	IPR010399	-
	Trre6g04848	347	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	186	234	-	-
	Trre6g04848	347	Pfam	CCT motif	128	169	IPR010402	GO:0005515
	Trre6g04848	347	MobiDBLite	consensus disorder prediction	165	187	-	-
	Trre6g04848	347	CDD	ZnF_GATA	191	235	IPR000679	GO:0006355\|GO:0043565
	Trre6g04848	347	MobiDBLite	consensus disorder prediction	1	38	-	-
	Trre6g04848	347	Pfam	tify domain	65	94	IPR010399	-
	Trre6g04848	347	ProSiteProfiles	GATA-type zinc finger domain profile.	186	232	IPR000679	GO:0006355\|GO:0043565
	Trre6g04848	347	SMART	GATA_3	186	239	IPR000679	GO:0006355\|GO:0043565
	Trre6g04848	347	MobiDBLite	consensus disorder prediction	309	347	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g04848	Trre-Chr6	51380626	51386796	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g04848	53	234	Tify Gene Family	AT1G51600	55.838	9.67e-62	197

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Trre6g04848		CCT	7e-15	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g04848	-		-	gmx:100801328	441.425