Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04844 ATGGACAATGAAATCAACTCTGTCTCTCGTCCACGGTTGGAAGAATGTCATCATTCTAACATGATGCAAAATGATTCTGCTGTTGCACAAAATGAGTTGTTGATGGATAATGAACTTGACTGGATACCTAAAGTAGGCAAACTATTCAATACTTGGGAAGATGCCTGGAAATTTTGGAATGATTATGGTGGGAAAAGAGGATTTAATATTCAAAGGCAATATCATAACAAAAACAAAGATGGAATGATATCTTCCGCGAGATATGTATGTAGCAAAGAAGGTGTTCGTAAACCGGACAAAAGAGATCACCTAACAGTTAACCATCGGTTTGAAACAAGAACTGAGTGCCCCGTAAAGTTAGGAATCAAATACATGAAAGACATAGAGAAGTATCAAATTCATGATTTTGTTGACAAACATAATCATCATTTGCATCTTCCAGAGACAACTCACATGCTTTCATGTCAACGCAAATTATCTGAAGTTCAAGCTCATGAAATTAATTTGGCAGATGATGCAGGCATCAAGCAAAGGGCCTTATTTGAACTAATGAGTAGACAAGTTGGTGGAAGAGAAAACCTAGGATACACACGTTTGGATCAAAAGAATTATCTTCGCATCAAAAGATTGAGAAACATGGCATATGGGGAGGTTGGTAGCTTATTACAACATTTTCAACAAAAGTCTATAGAAAACCCGTCATTCTATCACGGAGTTCAATTAGATGTTGATGAACAAATAACAAATATTTTTTGGGCAGATGCAAGAATGATAATGGATTATGAATACTTTGGCGATGTAGTAACTCTTGACACTACATATAGTACTAATAATACATATAGACCTCTGGCTGTATTTGCAGGATTTAATCATTTTAGAGGAGTGGTGATTTTTGGAGTTGCACTTCTTTATGATGAGACTGCAGAATCATTTGAATGGTTATTTAGAGAATTTTTGAAGGCACATAAAATCAAGAGGCCTCAAACTATTTTCACGGATCAAGACCATGCAATGGCTAAAGCTCTACGTGAGGTAATTCCTGAAACATATCATGGCTTGTGTACTTGGCATCTTATGCAAAATGCAATAAAACACCTTAGTAAATTCGCGAAGAATGGACCCAATTTGTTGGGAGAACTTAAGCTTTGTATGTACAAATATCTAGAAGAAGTTGATTTTCAAAGAGCATGGGATAAAATGGTGGAGGATTATAAACTTCAAGAAAGTGATTGGATGTTGGGTTTGTATAAAATAAAGGAGAAGTGGGCAAAATGTTACATGAAAAATACTATGACTATTGGCATGCGAAGCACACAACTTAGTGAAAGTGTCAATGCAGATTTGAAAAATTTCTTGAAACCAGACTTGGACATAATCCAATTTTTCACACACTTTGATAGGGTGGTTAGTGACAAAAGATATAATGAGTTACAACGTGAATTTGAATCTAGGCAAAAATTGCCAAGATTGAAAATGGAACATTCACCTTTATTGCAACAAGTTGCACAAACATATACATTGCCTATCTTTGATCTTTTTCAAAAAGAGTATGACAAGTACTCTGCAGCTTATATAAAAGAAGGAAAGGAAGGTGAACCAAATCATGAATACTTGGTTAGTTTGTATAATGAGAATGAAGAGTGTAAAGTTTTATTTAATCCTTCCACTGGCACAATTTCTTGTAGTTGTAGAAAATTTGAAACTTTAGGCATTTTGTGTTGTCATGTAATCAAGGTTCTTGATGTGAAAGATATTAAAACAATTCCTAATCAATATATTTTGAAAAGATGGACAAGGGAAGCCAAGCTTGGATGTGTGGAAGATACACATGGAAGAAAGGTTCAAGAAGATGTTAATATTGATAGCACACATTGGTATCGAGAGGTTTGCCCTAAATTGGTAAGAATAGCTACACGTGCATCTGATTGTAAGGAAGCACGTATCTATGTGGAAACTGTTATAAAGGAGTTGGATAAGAAGGTTTATGAAATTTGTGGAGATAATTTGGGATTGATAGATAAGAATGTTAGTCTTTCTTCTGTTGAACCAAATAACAATCAACAATCTCTACAATCCAAAAGCTTAAAAAGAAGAAATGGTGTGAAGGTTTTTAGAAAACGTCCAAAGAGTTGGAATGAGATTGAACTGACGAAGAAAAAAAGGGGCCGAAGTACTAGTATCTCACAAAATAAGAATAAGGAAAATATTGTCTCAAATAGCACATGTGGTGTGTCAAATTCACAGCCACTTTATTTTGCTTCAAATGCTCATGGTTACAAGGAGAAGGAAAGTATTGTATCAGATAACATTTGTGGTATTTCAAATTCACAACCACTTCAATTTGATTCAAATACTCATGGTTTTACTAGACTATTGATGGAACCAATTGGTGATACTTTTCTCCAATCAAGAAGTGTTGGCTTCAACCAAGTTTCAAATCATATGTCAATGTGGCTTCCTAATCAACAAAGGGAGAGCTGA 2481 0.3482 MDNEINSVSRPRLEECHHSNMMQNDSAVAQNELLMDNELDWIPKVGKLFNTWEDAWKFWNDYGGKRGFNIQRQYHNKNKDGMISSARYVCSKEGVRKPDKRDHLTVNHRFETRTECPVKLGIKYMKDIEKYQIHDFVDKHNHHLHLPETTHMLSCQRKLSEVQAHEINLADDAGIKQRALFELMSRQVGGRENLGYTRLDQKNYLRIKRLRNMAYGEVGSLLQHFQQKSIENPSFYHGVQLDVDEQITNIFWADARMIMDYEYFGDVVTLDTTYSTNNTYRPLAVFAGFNHFRGVVIFGVALLYDETAESFEWLFREFLKAHKIKRPQTIFTDQDHAMAKALREVIPETYHGLCTWHLMQNAIKHLSKFAKNGPNLLGELKLCMYKYLEEVDFQRAWDKMVEDYKLQESDWMLGLYKIKEKWAKCYMKNTMTIGMRSTQLSESVNADLKNFLKPDLDIIQFFTHFDRVVSDKRYNELQREFESRQKLPRLKMEHSPLLQQVAQTYTLPIFDLFQKEYDKYSAAYIKEGKEGEPNHEYLVSLYNENEECKVLFNPSTGTISCSCRKFETLGILCCHVIKVLDVKDIKTIPNQYILKRWTREAKLGCVEDTHGRKVQEDVNIDSTHWYREVCPKLVRIATRASDCKEARIYVETVIKELDKKVYEICGDNLGLIDKNVSLSSVEPNNNQQSLQSKSLKRRNGVKVFRKRPKSWNEIELTKKKRGRSTSISQNKNKENIVSNSTCGVSNSQPLYFASNAHGYKEKESIVSDNICGISNSQPLQFDSNTHGFTRLLMEPIGDTFLQSRSVGFNQVSNHMSMWLPNQQRES 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04844 826 ProSiteProfiles Zinc finger SWIM-type profile. 537 584 IPR007527 GO:0008270
Trre6g04844 826 Pfam SWIM zinc finger 537 582 IPR007527 GO:0008270
Trre6g04844 826 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 661 IPR031052 GO:0006355
Trre6g04844 826 SMART 26again6 559 586 IPR006564 GO:0008270
Trre6g04844 826 Pfam FAR1 DNA-binding domain 57 144 IPR004330 -
Trre6g04844 826 Pfam MULE transposase domain 267 361 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04844 Trre-Chr6 51233219 51236076 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre6g04844 MULE 8.8e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04844 - - adu:107465301 983.4