Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04836 ATGAGGAAGAAAAGGAAAGGAAGTGAGACTGATGCATCTACGGATCTGTGTGATGTTGTTTTACCTTTGGATCATGATCATGGTTCTGTTGCCTCGTCGATTTTGAAGTCTCATTATTCGTTGGAAGATTATTGTAGGTTGAAGAAAAGATGCAAAGAAGATGCTAGTGAGCTTGCGGGTTCGTTTAAAAGTAGACTTGCTGGCATTGCCACTGCGCCGCCTTGTGGGACTTCATCTTTGATTACATCGACGAAAGGTCTTAAGAGGAAGATAGGTTGTATTGATGTTGCTACTCAGATGGGTAGGAAGAAGAAGATTGATGATGATTATATTTCTGGTGAATCGATCGGTCAAGGAAAATTTGGATCGGTTTATTTGTGTAGGTCTAGGGTTAGTGGAGCGGAATTTGCGTGTAAAACTTTGAGGAAAGGTGAGGAGACGGTTCATCGAGAGGTTGAGATAATGCAACATTTGTCTGGACATTCTGGGGTTGTGACATTGCAAGCAGTTTATGAAGAAGCGGAAAGCTTTCACCTTGTTATGGAATTGTGCTCTGGGGGACGATTGATTGATCAAATGGTTAAGGACGGTCCATATTCAGAACAGCGGGCTGCTAACATTTTAAAGGAAGTGATGTTAGTCATTAAGTACTGCCATGACATGGGAGTTGTGCATAGAGATATTAAGCCTGAGAATATTCTGCTCACAAAAGCAGGAAGATTAAAGCTTGCAGATTTTGGACTCGCCATGAGAATTTCGGAAGGTCAAAACTTGACTGGATTGGCTGGAAGCCCTGCATATGTTGCTCCTGAAGTATTGTTGGGAAAATACTCTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTATTGGTTGGCTCTCTTCCATTTCAGGGAGATTCGTTGGAAGCTGTTTTTGAGGCTATTAAGACTGCCAAATTAGATTTCCAAGCAGGGATGTGGGAATCGATATCTAAACCTGCACGCGATCTTATTGGGAGAATGCTGACAAGGGATACTTCTGCCAGGATATCAGCTGATGAAGTACTTAGGCATCCATGGATTTTGTTCTACACCGCCCAATCATTGCCAATGCTGCCCATCAAAACAAAATTGAAGAATCAAATTGGTTCAACATGCAGACAGGTTGTCGCCACACCAGAACCTAAATTAGGAGGAAACACGATCAATAATGTCTCACATAGCGAGCTTTTATCTTCCGAAAGTTACAATTCAGATGATCCAGATGAATGTGTGTTGATTGATGCACTTGCCACTGCAATTTCACATGTGAGGATATCTGAACCAAAGAGAAGTAGGTTGTGTAGTCCCACTGGTCCCATAGTTCAGCAAGGTTCATCTAATATGAAAGCTAACAACCTCTGTAAAGCATTTTGA 1407 0.4215 MRKKRKGSETDASTDLCDVVLPLDHDHGSVASSILKSHYSLEDYCRLKKRCKEDASELAGSFKSRLAGIATAPPCGTSSLITSTKGLKRKIGCIDVATQMGRKKKIDDDYISGESIGQGKFGSVYLCRSRVSGAEFACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAESFHLVMELCSGGRLIDQMVKDGPYSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTKAGRLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGKYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTAKLDFQAGMWESISKPARDLIGRMLTRDTSARISADEVLRHPWILFYTAQSLPMLPIKTKLKNQIGSTCRQVVATPEPKLGGNTINNVSHSELLSSESYNSDDPDECVLIDALATAISHVRISEPKRSRLCSPTGPIVQQGSSNMKANNLCKAF 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04836 468 Gene3D Transferase(Phosphotransferase) domain 1 101 421 - -
Trre6g04836 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Trre6g04836 468 CDD STKc_CAMK 109 357 - -
Trre6g04836 468 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Trre6g04836 468 SUPERFAMILY Protein kinase-like (PK-like) 107 385 IPR011009 -
Trre6g04836 468 FunFam Aurora kinase A 102 187 - -
Trre6g04836 468 ProSiteProfiles Protein kinase domain profile. 110 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04836 468 Pfam Protein kinase domain 111 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04836 468 SMART serkin_6 110 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04836 468 PANTHER SERINE/THREONINE-PROTEIN KINASE 97 372 - -
Trre6g04836 468 FunFam Serine/threonine-protein kinase PEPKR2 101 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04836 Trre-Chr6 51150610 51152344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04836 105 358 EF-hand Containing Proteins AT4G35310 44.697 1.53e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre6g04836 Pkinase 3.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04836 - - gmx:100812729 784.252