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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Trre6g04822
ATGAACACTTTCCCACTCAAACTTCACTTCAATTTCAATCATGCCTTTCCCTATCTCTTCCTCCTGCTCCTCCTTCTCTTCATCATCGTTCTTCCACCACCGGCAACGGCACAGATTCCGAATACAAAACCACCACCACCGCCTCCGCCGGAGGACAGAATTACCAAGCTCAAATTCGACAAATCAATGGCAATTGTGTTAGTAATCTTAGTTGCTGTTTTTTTCATCCTTGGTTTTCTCTCCGTCTACACTCGCCAGTGCGCAGAACAGAGAATTAGAGGAAGATTTGATTTATCACTTCCGATCGCCGGAAGTCACCGGAGACACCGTGGACTTGACTCTGAAATCATCGAAACTTTTCCGACGTTTGTTTACTCCACCGTGAAAGGTCATAAAATTGGAAGAGCCGCGCTAGAATGCGCCGTTTGTTTAAACGAATTTCAAGACGATGAAACGCTGCGTTTGATTCCTAATTGTTGCCACGTGTTTCATCCTGAATGTATTGATGCTTGGCTTGTTAATCACTCCACGTGTCCTGTTTGTCGGGCAAATCTAATCCCTAAACCCGGATCCGTTTCAATTCAGATTCCGGATTTGTATACATCCGATTCCGATGGCCCGACCCGAAATAATTCGGTTGGCGAAAACGCGGCTAATACAGATACCGTTATTATTACATCTCGTTCTCCATCTCCTAAAGTGAATTATTCAATTACACCGAACCGGGCTCGACCGGTTCGATCAAGTTCAACCGGGTTTAAAATTGGGAATTGGTTACCATTTCCACGGTCGCATTCAACGGGCCATTCACTAGTTCTTGAGGGGGAGAGTCATGAGCGGTTCACGTTGAGATTACCGGAGGAAGTACGGAACCGGTTGATGGGTTCAACGCCGAGTTGTGGTGTAAGTTTTACTCGAGAGGGAAGTGGGAGGAGAGGTTATAGAACGAGGAGTGTGGGAAGTAGTGCTCCTGGGAGGAATTATGAGTGGTTTAACCGGCCGGACCGGAGAGGATTCTCTTGGACTCCGCCATTTATGGGTCGAATCGGTTCGAGTTGGTCGAAGAATAAGTCACCTGGGAAATTGGATGATGTGGGAGAACGGTCTTCTGATCGCTTGTTTGAAGCATGTAGAGACAAATGGAGAGGGAATAGAAGGGTTGTTGAAGTTATATCCTCTTTGTTGTTATTTTTGAAATTTAAAGGTTGTTGA
1212
0.4579
MNTFPLKLHFNFNHAFPYLFLLLLLLFIIVLPPPATAQIPNTKPPPPPPPEDRITKLKFDKSMAIVLVILVAVFFILGFLSVYTRQCAEQRIRGRFDLSLPIAGSHRRHRGLDSEIIETFPTFVYSTVKGHKIGRAALECAVCLNEFQDDETLRLIPNCCHVFHPECIDAWLVNHSTCPVCRANLIPKPGSVSIQIPDLYTSDSDGPTRNNSVGENAANTDTVIITSRSPSPKVNYSITPNRARPVRSSSTGFKIGNWLPFPRSHSTGHSLVLEGESHERFTLRLPEEVRNRLMGSTPSCGVSFTREGSGRRGYRTRSVGSSAPGRNYEWFNRPDRRGFSWTPPFMGRIGSSWSKNKSPGKLDDVGERSSDRLFEACRDKWRGNRRVVEVISSLLLFLKFKGC
403
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Trre6g04822
403
SMART
ring_2
140
181
IPR001841
-
Trre6g04822
403
MobiDBLite
consensus disorder prediction
294
320
-
-
Trre6g04822
403
ProSiteProfiles
Zinc finger RING-type profile.
140
182
IPR001841
-
Trre6g04822
403
CDD
RING-H2_EL5-like
139
182
-
-
Trre6g04822
403
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
102
187
IPR013083
-
Trre6g04822
403
PANTHER
RING FINGER DOMAIN-CONTAINING
40
191
-
-
Trre6g04822
403
SUPERFAMILY
RING/U-box
134
192
-
-
Trre6g04822
403
Pfam
Ring finger domain
139
182
IPR001841
-
Trre6g04822
403
FunFam
E3 ubiquitin-protein ligase ATL6
102
188
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Trre6g04822
Trre-Chr6
51041371
51047626
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Trre6g04822
9
348
Rapid Response to Elicitors
AT3G05200
37.571
6.25e-61
200
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Trre6g04822
K10664
-
gmx:100807828
363.614
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