Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04822 ATGAACACTTTCCCACTCAAACTTCACTTCAATTTCAATCATGCCTTTCCCTATCTCTTCCTCCTGCTCCTCCTTCTCTTCATCATCGTTCTTCCACCACCGGCAACGGCACAGATTCCGAATACAAAACCACCACCACCGCCTCCGCCGGAGGACAGAATTACCAAGCTCAAATTCGACAAATCAATGGCAATTGTGTTAGTAATCTTAGTTGCTGTTTTTTTCATCCTTGGTTTTCTCTCCGTCTACACTCGCCAGTGCGCAGAACAGAGAATTAGAGGAAGATTTGATTTATCACTTCCGATCGCCGGAAGTCACCGGAGACACCGTGGACTTGACTCTGAAATCATCGAAACTTTTCCGACGTTTGTTTACTCCACCGTGAAAGGTCATAAAATTGGAAGAGCCGCGCTAGAATGCGCCGTTTGTTTAAACGAATTTCAAGACGATGAAACGCTGCGTTTGATTCCTAATTGTTGCCACGTGTTTCATCCTGAATGTATTGATGCTTGGCTTGTTAATCACTCCACGTGTCCTGTTTGTCGGGCAAATCTAATCCCTAAACCCGGATCCGTTTCAATTCAGATTCCGGATTTGTATACATCCGATTCCGATGGCCCGACCCGAAATAATTCGGTTGGCGAAAACGCGGCTAATACAGATACCGTTATTATTACATCTCGTTCTCCATCTCCTAAAGTGAATTATTCAATTACACCGAACCGGGCTCGACCGGTTCGATCAAGTTCAACCGGGTTTAAAATTGGGAATTGGTTACCATTTCCACGGTCGCATTCAACGGGCCATTCACTAGTTCTTGAGGGGGAGAGTCATGAGCGGTTCACGTTGAGATTACCGGAGGAAGTACGGAACCGGTTGATGGGTTCAACGCCGAGTTGTGGTGTAAGTTTTACTCGAGAGGGAAGTGGGAGGAGAGGTTATAGAACGAGGAGTGTGGGAAGTAGTGCTCCTGGGAGGAATTATGAGTGGTTTAACCGGCCGGACCGGAGAGGATTCTCTTGGACTCCGCCATTTATGGGTCGAATCGGTTCGAGTTGGTCGAAGAATAAGTCACCTGGGAAATTGGATGATGTGGGAGAACGGTCTTCTGATCGCTTGTTTGAAGCATGTAGAGACAAATGGAGAGGGAATAGAAGGGTTGTTGAAGTTATATCCTCTTTGTTGTTATTTTTGAAATTTAAAGGTTGTTGA 1212 0.4579 MNTFPLKLHFNFNHAFPYLFLLLLLLFIIVLPPPATAQIPNTKPPPPPPPEDRITKLKFDKSMAIVLVILVAVFFILGFLSVYTRQCAEQRIRGRFDLSLPIAGSHRRHRGLDSEIIETFPTFVYSTVKGHKIGRAALECAVCLNEFQDDETLRLIPNCCHVFHPECIDAWLVNHSTCPVCRANLIPKPGSVSIQIPDLYTSDSDGPTRNNSVGENAANTDTVIITSRSPSPKVNYSITPNRARPVRSSSTGFKIGNWLPFPRSHSTGHSLVLEGESHERFTLRLPEEVRNRLMGSTPSCGVSFTREGSGRRGYRTRSVGSSAPGRNYEWFNRPDRRGFSWTPPFMGRIGSSWSKNKSPGKLDDVGERSSDRLFEACRDKWRGNRRVVEVISSLLLFLKFKGC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04822 403 SMART ring_2 140 181 IPR001841 -
Trre6g04822 403 MobiDBLite consensus disorder prediction 294 320 - -
Trre6g04822 403 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Trre6g04822 403 CDD RING-H2_EL5-like 139 182 - -
Trre6g04822 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 187 IPR013083 -
Trre6g04822 403 PANTHER RING FINGER DOMAIN-CONTAINING 40 191 - -
Trre6g04822 403 SUPERFAMILY RING/U-box 134 192 - -
Trre6g04822 403 Pfam Ring finger domain 139 182 IPR001841 -
Trre6g04822 403 FunFam E3 ubiquitin-protein ligase ATL6 102 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04822 Trre-Chr6 51041371 51047626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04822 9 348 Rapid Response to Elicitors AT3G05200 37.571 6.25e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04822 K10664 - gmx:100807828 363.614