Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04821 ATGGCACTTGAAACTGTGGTTTACCCACAAGATCCATTTAATTATTGTTACAAAGATAATTACTTCAACTCATTAAGCAATGATTATGTTACTCTTCAAGATGAAGAACAAGAGAATGTTCTCCTAGGAATCATCAACAACAACGTTGAACAACAACAACATCAACAACAACAACAAAATTTCCATGCAAATTATGATTCTTGTTCTGTTAAAGATCAATGGCCAGAATATTCACACTCTTCATCTCCTGAAATCTGCACCGTTGATCAAACTATAACAGCATCTTCTTCATTGCTTCCCCCTTCTTCTACCACCATGGAAGGTGCATCAGCAGCAACTGCCACGTGTCGAAGAAAACGGCGTCGTATTAAGAGTGCAAAGAACAAAGAAGAGATTGAAAATCAAAGGATGACTCACATTACTGTTGAAAGAAATCGAAGGAAACAAATGAATGAATACTTGAATGTGCTTCGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCAATTATTGGTGGAGCAATAAACTTTGTGAAAGAGTTAGAACAACTTTTACAATCCATGGGGGGCCAAAAGAAAACACAAGAGAATATAGGTTTAAATAATGGACCACCTTTTTCTGAGTTCTTCACTTTTCCTCAGTACACAACAAGTGCAACAACAACAACATCTAACAACATGGTCACAATGGAACAAAAACAATGGGCTGTTGCAGACATTGAAGTCACAATGGTAGATAGTCATGCTAACATGAAAATTATGTCCAAGAAAAAAACAGGACAACTTATGAAGATTGTTGTTGGGTTACAAAATCTTAGGCTTACAATTCTTCATCTTAATGTTACCACTTTGGATGATATGGTCCTTTACTCAATTAGTGTCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTAAGGAACGTCCAACAAGAACTGGATTATCAACTAAATTGA 999 0.3694 MALETVVYPQDPFNYCYKDNYFNSLSNDYVTLQDEEQENVLLGIINNNVEQQQHQQQQQNFHANYDSCSVKDQWPEYSHSSSPEICTVDQTITASSSLLPPSSTTMEGASAATATCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMGGQKKTQENIGLNNGPPFSEFFTFPQYTTSATTTTSNNMVTMEQKQWAVADIEVTMVDSHANMKIMSKKKTGQLMKIVVGLQNLRLTILHLNVTTLDDMVLYSISVKVEEGSQLNSVDEIAAAVNQLLRNVQQELDYQLN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04821 332 Gene3D - 124 201 IPR036638 GO:0046983
Trre6g04821 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 197 IPR036638 GO:0046983
Trre6g04821 332 Pfam Helix-loop-helix DNA-binding domain 135 186 IPR011598 GO:0046983
Trre6g04821 332 CDD bHLH_AtFAMA_like 137 200 - -
Trre6g04821 332 PANTHER MAX DIMERIZATION, MAD 39 323 - -
Trre6g04821 332 SMART finulus 140 191 IPR011598 GO:0046983
Trre6g04821 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04821 Trre-Chr6 51010651 51012790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04821 1 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.561 8.33e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g04821 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04821 - - gmx:100805420 379.793