Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04818 ATGGCGCTACTACGAACAATTCCATGTTCAACTCAATTATCCACAAAACAACACTTCGAATTTGATAACAAGAAACATTCTTCTACTAATCCCTTCTTTTCTTCTTCTTTTCACTCTCTTCGTCTATCCATTTCACATTCTCCAACAACCGTTATCAGAACCAAACAACACTCCAATTCTACTCTCAGATTCACCTCTACTTCAGAACAAGTAACCACCCAAGAACAACAACAAGACACAGAAGAACAAAAAGAAGAAGAAGAAGTGTCTTCTACTAGGTTGCTTGCTCAGAATTTTCCATGGACAAGTACTGCCCAAGATGTTCGTACTTTGTTTGAAAAATATGGAAAAGTTGTTGATGTTGAGCTTTCTATGTATAATAAGTACAAAAACAGGGGTTTAGCTTTTGTGGAAATGGGTTCCCCCGAAGAAGCTCTTGCTGCTCTCAATGCTCTTCAATCGTATGAATTTGAGGGCCGTGTAATAAATCTCAAATATGCTCGGCCTAAAAAGGAGAAAACACTGCCACCAGTTGAACGAACGCCAATAACATTTAAGTTGTTTGTTGCAAATTTGTCCTATGAAACAAGGGCTAAAGATCTCAGAGAGTTTTTTGATTCGGGAACTAGTAAAGTTGTTTCTGCAGATGTTGTATTTCGCGAGAATCCTAGAAGGCCTGCTGGCCGGCCTGGCCTATTCCCAACCCTACCTGCTGGTTATGGATTTGTGTCCTTCAAGACCAAGAAAGAAGCCGATGAAGCTCTTTCCGAGTTTCAAGGAAAGATTTTGTTGGGAAGGCCAATTAGGGTTGCACCTGGTAAGCGAACTGTTAAACCAACAGAGGAGAGTGCAGGATCCGAAGATACATCTTCTGAGTCGAGCGTCAATGAGGAGGCAGAAGTAGTTTGCACCTTTGTGAACATGAGGTTGAACAGATAA 939 0.41 MALLRTIPCSTQLSTKQHFEFDNKKHSSTNPFFSSSFHSLRLSISHSPTTVIRTKQHSNSTLRFTSTSEQVTTQEQQQDTEEQKEEEEVSSTRLLAQNFPWTSTAQDVRTLFEKYGKVVDVELSMYNKYKNRGLAFVEMGSPEEALAALNALQSYEFEGRVINLKYARPKKEKTLPPVERTPITFKLFVANLSYETRAKDLREFFDSGTSKVVSADVVFRENPRRPAGRPGLFPTLPAGYGFVSFKTKKEADEALSEFQGKILLGRPIRVAPGKRTVKPTEESAGSEDTSSESSVNEEAEVVCTFVNMRLNR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04818 312 CDD RRM_SF 98 165 - -
Trre6g04818 312 SMART rrm1_1 186 271 IPR000504 GO:0003723
Trre6g04818 312 SMART rrm1_1 93 165 IPR000504 GO:0003723
Trre6g04818 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 162 IPR000504 GO:0003723
Trre6g04818 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 269 IPR000504 GO:0003723
Trre6g04818 312 Gene3D - 52 176 IPR012677 -
Trre6g04818 312 PANTHER OS02G0815200 PROTEIN 27 272 - -
Trre6g04818 312 MobiDBLite consensus disorder prediction 283 298 - -
Trre6g04818 312 SUPERFAMILY RNA-binding domain, RBD 91 220 IPR035979 GO:0003676
Trre6g04818 312 MobiDBLite consensus disorder prediction 51 77 - -
Trre6g04818 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 275 IPR000504 GO:0003723
Trre6g04818 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Trre6g04818 312 MobiDBLite consensus disorder prediction 51 91 - -
Trre6g04818 312 MobiDBLite consensus disorder prediction 273 298 - -
Trre6g04818 312 Gene3D - 177 299 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04818 Trre-Chr6 50995219 50998112 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04818 91 275 Eukaryotic Initiation Factors Gene Family AT3G16380 27.835 3.34e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04818 - - gmx:100790439 280.026