Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04817 ATGGCGCTACTACTACGAACTATTCCATGTTCAACTCAATTATCCACAAAACAACACTTCGAATTTGAAAACAGGAAACATTCTTCTACAAATCCCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCACTCTCCTCTTCGTCTATCCATTTCTCATCATACTCCAACAACAACCCTTATCAGAACCAAACAACACTCCAATTCTACTCTCAGATTCACCTCTATTTCAGAACAATTAACCACCCAAGAACAACAACAAGACACGGAAGAACAAAAAGAAGAAGAAGAAGTGTCTTCTACTAGGTTGCTTGTTCAAAATTTTCCATTTACAAGTACTGCCGAAGATCTTCGTACTTTGTTTGAAAAGTACGGAAAAGTTGTCGATATTGAGCTTTCTAAGTATGGTAAGAATAAGAACAAACACAGGGGTTTTGCTTTTGTGGAAATGGATTCCCCTGAAGAAGCTCTTGCTGCTCTCAATAGTCTTCAATCATATGAGTTTGAGGGCCGTGTAATAAATCTCAAATATGCTCGGCCTAAAAAGGAGAAAACACTGCCATCAGTTGAACGAACGTTGTTTGTTGGAAATTTGTCGTACGAAACAAGGACTAAAGATCTCAGAGAGTTATTTGATTCGGGAACTAGTAAAGTTGTTTCTGCAGATGTTGTATTTCGTGAGAATCCTAGAAGGCCTGCTGGTCGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGATGCAGCTCTTTCCGAGTTTCAAGGAAAGATTTTGTTGGGAAGGCCAATTAGGATTGCACCTGGTAAGCGAATTGTTAAACCGGCAGAGGAGAGTGCAGGATCCGAAGATACATCTTCTGAGTCGAGCGTCAATGAGGAGGCAGAAATTAACAAAGCCGATTGA 909 0.3971 MALLLRTIPCSTQLSTKQHFEFENRKHSSTNPFFSSSSSSSSSFHSPLRLSISHHTPTTTLIRTKQHSNSTLRFTSISEQLTTQEQQQDTEEQKEEEEVSSTRLLVQNFPFTSTAEDLRTLFEKYGKVVDIELSKYGKNKNKHRGFAFVEMDSPEEALAALNSLQSYEFEGRVINLKYARPKKEKTLPSVERTLFVGNLSYETRTKDLRELFDSGTSKVVSADVVFRENPRRPAGRYGFVSFKSKKEADAALSEFQGKILLGRPIRIAPGKRIVKPAEESAGSEDTSSESSVNEEAEINKAD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04817 302 MobiDBLite consensus disorder prediction 78 101 - -
Trre6g04817 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 266 IPR000504 GO:0003723
Trre6g04817 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 174 IPR000504 GO:0003723
Trre6g04817 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 181 IPR000504 GO:0003723
Trre6g04817 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 272 IPR000504 GO:0003723
Trre6g04817 302 MobiDBLite consensus disorder prediction 272 302 - -
Trre6g04817 302 SUPERFAMILY RNA-binding domain, RBD 101 267 IPR035979 GO:0003676
Trre6g04817 302 CDD RRM_SF 194 267 - -
Trre6g04817 302 Gene3D - 185 286 IPR012677 -
Trre6g04817 302 Gene3D - 62 184 IPR012677 -
Trre6g04817 302 PANTHER OS02G0815200 PROTEIN 27 268 - -
Trre6g04817 302 SMART rrm1_1 103 177 IPR000504 GO:0003723
Trre6g04817 302 SMART rrm1_1 193 268 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04817 Trre-Chr6 50990690 50992562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04817 101 272 Eukaryotic Initiation Factors Gene Family AT3G16380 30.108 2.15e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04817 - - gmx:100790439 266.544