Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04800 ATGCCGATCATCAAAAGCATTACAAGAGAATATATTGGCAAGCCAATAAGATGCAAAGCTGCAATATGCAGAAAATCAGGTGAACCTCTTGTTATAGAAGAAGTTGAATTAGACCCACCAAAATCATGGGAAGTACGGATCAAAATTTTATCCACATCTCTCTGCCATTCTGATCTCACCTTTTGGAAAATGGATTCTTATGTACCTGCAGCCGTGTTTCCTAGAATTTTAGGACACGAAGCCGTGGGAGTTGTGGAGAGTGTAGGTGAGTATGTGGAAGAAGTGAAAGAAGGCGATTTAGTGGTGCCGGTGTTTCTTGCAAACTGTGGAGAATGCAGAGACTGTGAAAGCACAAAAAGCAACAATTGCAGCAAGTTTGGGAGCAATCCATTCCAGTATCAGTATGGGATGCCAAGAGATGGAACAAGCAGGTTTAGGGACATCAATGGAGAAGTGGTGCACCATTTATTTGGTGTGAGCAGTTTTTCTGAGTATACTGTGGTGGATGTAACACATTTGGTTAAAATTGTACAAGATTTTCCTCTTGATAAGGCTTGCTTGCTCAGTTGCGGTGTTTCCACAGGGGTAGGGGCCGCGTGGAAGGTGGCTGACGTAGAAAAAGGGTCCACAGTAGCTATTTTTGGGCTTGGTGCTGTAGGCCTAGCGGTTGCTCTAGGAGCCAAACAAAGAGGAGCGTCGATGATTATAGGCATTGATTTAAATCAGGATAAATTTGAAATAGGAAAACAATTTGGAGTAACTGATTTTGTGAATCCCTCCACTTGCAAGGAGAAGTCGGTCAGCGAGGTGATTAAGGATATGACAAATGGAGGAGCCGATTATTGCTTCGAGTGCATAGGCTTGGCATCACTAATGGCAGAGGCTTTTAATAGTAGCCGAGAAGGTTGGGGGAAAACAGTGATAATAGGGGTGGAAATGCACGGTTCACCATTGACTTTAAGTCCTTATACCATACTAAGAGGCAGAACTATCACTGGATCACTATTTGGAGGCATCAAAGCAAAATCTGATCTTCCCCTCCTTGCTCAAAAGTACTTAGACAAAGAGCTTAACTTGGATGGGTTTATAACACAAGAAGTGGACTTCAAAGACATTAACAAAGCTTTTGACTATATGGTGCAAGGAAAGAGCATTCGTTGCATTATAAGGATGGATCATTGA 1182 0.4247 MPIIKSITREYIGKPIRCKAAICRKSGEPLVIEEVELDPPKSWEVRIKILSTSLCHSDLTFWKMDSYVPAAVFPRILGHEAVGVVESVGEYVEEVKEGDLVVPVFLANCGECRDCESTKSNNCSKFGSNPFQYQYGMPRDGTSRFRDINGEVVHHLFGVSSFSEYTVVDVTHLVKIVQDFPLDKACLLSCGVSTGVGAAWKVADVEKGSTVAIFGLGAVGLAVALGAKQRGASMIIGIDLNQDKFEIGKQFGVTDFVNPSTCKEKSVSEVIKDMTNGGADYCFECIGLASLMAEAFNSSREGWGKTVIIGVEMHGSPLTLSPYTILRGRTITGSLFGGIKAKSDLPLLAQKYLDKELNLDGFITQEVDFKDINKAFDYMVQGKSIRCIIRMDH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04800 393 SUPERFAMILY GroES-like 13 200 IPR011032 -
Trre6g04800 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 181 354 IPR036291 -
Trre6g04800 393 Coils Coil 393 393 - -
Trre6g04800 393 Pfam Zinc-binding dehydrogenase 218 339 IPR013149 -
Trre6g04800 393 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Trre6g04800 393 FunFam S-(hydroxymethyl)glutathione dehydrogenase 195 334 - -
Trre6g04800 393 Gene3D - 22 387 - -
Trre6g04800 393 Pfam Alcohol dehydrogenase GroES-like domain 44 176 IPR013154 -
Trre6g04800 393 PANTHER ALCOHOL DEHYDROGENASE 13 389 - -
Trre6g04800 393 SUPERFAMILY GroES-like 341 390 IPR011032 -
Trre6g04800 393 Gene3D - 195 334 - -
Trre6g04800 393 FunFam Alcohol dehydrogenase 6 21 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04800 Trre-Chr6 50884815 50892363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04800 44 381 Monolignol Biosynthesis Gene Families AT2G21730 25.948 3.43e-13 68.6