Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04790 ATGGATTCTGAAGCTCACATTCATACTCAAAGAGATCGAAGAACAGACGCTCTTGGAGATCTCCGAGTTCTTCCCGACGAAACCATCTGCTCAATTTTGGAACGACTCACTCCTCGAGATGCTGCTCGCGTCGCTTGCGTTAGCAGTGTGATGTATATACTATCCAATGAAGAACCATTATGGATGACTCTATGCCTAAGAGGAGCATCTGGTTTTCTTCAATACAAAGGCTCTTGGAAGAAAACTGCTCTGCATAATGAGAATCTTCCAGACAAGTACAAAGAGTGGCATAGACCGCCTTTACATTTTGATGGATTCAATTCTTTATTTTTGTATCGGAGGTTATACCGGTGTCATACCACATTGGATACATTTTATACAGTCGGTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAACGAGTATGACATGAAGAAACCGGTCATGCTTAATGGACTGGCGGATACATGGCCAGCTAGGCATAAATGGACAACTGATCAGCTGTTACTAGACTATGGAGACGTAGCGTTTAAAATTTCTCAAAGGAGTTCCAAAAAGGTCTCCATGAAGTTCAAGGATTATGTCTCCTATATGGAAGTTCAACATGATGAAGACCCATTATATATTTTTGACGAAAAGTTTGGCGAACATGCACCTAGCTTATTGAAGGATTACTCTGTGCCTCATCTTTTTCAAGAAGACTTGTTTGATATCTTAGATACGGATAAACGACCATCCTATAGGTGGCTCATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACAAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCACCTGGAAAAGTGCCTTTAGGTGTGACAGTACATGTTAATGAAGAAGATGGCGATGTCAATATTGAGACACCATCATCACTGCAGTGGTGGCTAGATTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAATGTACACAACTTCCTGGAGAGACAATTTATGTTCCGAGTGGATGGTGGCACTGTATTTTAAATTTGGAAACAACTATTGCAGTCACACAGAATTTTGTGAATTCTAATAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGTCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGTTTATGAAAATGTCATGCAGAACATGTCATGTAATGAAGAAAGTTTAAGTTACTCTGATTTGTCAAGGAAAGAAAAAAGATCCAAAACTCTGAAAGATGTAGATGATCTATGTCTTGAAAGAGAAATAAGCGGTGTATCTAGAAGCTATAATTTATGGAAAGGTGGATTTTCTTATGATATAAACTTCTTGTCCATGTTTTTGGATAAGGATAGAGACCACTACAGTTCTGAGTGGAGCTCAGGCAACAGCATTGGACAACGAGAACTAAGAGAATGGTTATCCAAACTTTGGATTCAAAAGCCAGATATGAGAGATCTAATATGGAAGGGAGCATGTATTGCACTAAATGCGGACAAGTGGTTAGAATGCTTGTCAAAAATTTGTGCCTTCAACAATCTGCCCCCTCCCACTGATGACGAAAGGCTTCCTGTTGGCACGGGTAGCAATCCTGTTTATCTCGTGGGGAACAATGTTGTTAAAATTTTTGTTGAAGGAGGACTGGAAGCATCGCTTTACGGTTTAGGCACAGAGCTAGAGTTTTATACTCTGCTGCTTGAAGCCGACTCCCCTCTCAGGAAACATATTCCTAGTGTTCTGGCCAGTGGGGTTGTTTATCTTGAAGACGGATCCTATAACAATTTAAGTTGGGATGGAAAAGGAGTTCCCAACGTCATTCTGAAGAGCAATATCATTACAAACAAATGTGATGTTCATGGTTTCCCATTTGGGGTATGGGGCAAGAAACTGCTAGAGAATAGGAATGCTGGGATTTCGGTGGACGGATCAGTTAGTTTAGCCGATAACTCAAGCATATGGCCATATATGATAACTAAGCGATGTGAAGGGAATATGTTTGCTGACTTAAGAGACAGATTATCATGGGAAGATACAACAAACTTGGCTTCCTTCTTGGGGGAGCAACTGCGCCACCTTCATCTTTTGCCACATCCACCTTTAAATAATTCATTTATATCTGATATTGAACGTGAATTAAGCTGGTCTGATGCGAATGGTTGTGTTGCAAATGTTAATGGTAAATCAAACAATGCAGCAGAATGGGGAATCTTCATCAGAATCTTAACAAAGAAGAGGAAGGATGTCTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATTGAGAAAATTGACGAATATATCCCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGTGGTGCCTCTAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCATCATCGGTTTGCTCTACCTCCAGTGGAAATACAGAAGATGCTGCCCAGGCGGACAATGGTTTATTGAGTAACCATGTTGGAGTGAAATCCTGGTGTCCTAGTTACATCCTTGATTTCAGTGATCTTTCTATGGGTGATCCTATTTTTGATTTGATACCAATTTATTTAGACGTGTTTAGAGGCGATTCATATCTCCTTAAGCAATTCTTAGAAAGTTACAAACTTCCTTTTTCTTGCAACATATCTAAGTACGAGTCAGCAGAGGGTGGTCAAAAGTTTGGTCGACTTTCATATGTTGCTATGTGTTATTGTATTTTACACGATGATAATGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTGAGATCATCAGAGTCATGGGAAGAAGTTGAGATGACAGTGTGGGGAGAGCTGAACAATTACAAAGGCTTTCTTTGA 2928 0.3989 MDSEAHIHTQRDRRTDALGDLRVLPDETICSILERLTPRDAARVACVSSVMYILSNEEPLWMTLCLRGASGFLQYKGSWKKTALHNENLPDKYKEWHRPPLHFDGFNSLFLYRRLYRCHTTLDTFYTVGGNVERIKDISLKDFYNEYDMKKPVMLNGLADTWPARHKWTTDQLLLDYGDVAFKISQRSSKKVSMKFKDYVSYMEVQHDEDPLYIFDEKFGEHAPSLLKDYSVPHLFQEDLFDILDTDKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEEDVYENVMQNMSCNEESLSYSDLSRKEKRSKTLKDVDDLCLEREISGVSRSYNLWKGGFSYDINFLSMFLDKDRDHYSSEWSSGNSIGQRELREWLSKLWIQKPDMRDLIWKGACIALNADKWLECLSKICAFNNLPPPTDDERLPVGTGSNPVYLVGNNVVKIFVEGGLEASLYGLGTELEFYTLLLEADSPLRKHIPSVLASGVVYLEDGSYNNLSWDGKGVPNVILKSNIITNKCDVHGFPFGVWGKKLLENRNAGISVDGSVSLADNSSIWPYMITKRCEGNMFADLRDRLSWEDTTNLASFLGEQLRHLHLLPHPPLNNSFISDIERELSWSDANGCVANVNGKSNNAAEWGIFIRILTKKRKDVSSRLTKWGDPIPSKLIEKIDEYIPSDLSKLLNINENFSSGASKPCSWIHTDIMDDNIYMEPSSVCSTSSGNTEDAAQADNGLLSNHVGVKSWCPSYILDFSDLSMGDPIFDLIPIYLDVFRGDSYLLKQFLESYKLPFSCNISKYESAEGGQKFGRLSYVAMCYCILHDDNVLGAIFSIWEELRSSESWEEVEMTVWGELNNYKGFL 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04790 975 SUPERFAMILY Clavaminate synthase-like 120 377 - -
Trre6g04790 975 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515
Trre6g04790 975 Gene3D Cupin 114 369 - -
Trre6g04790 975 SMART fbox_2 24 64 IPR001810 GO:0005515
Trre6g04790 975 SMART cupin_9 212 379 IPR003347 -
Trre6g04790 975 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 18 586 - -
Trre6g04790 975 SUPERFAMILY Protein kinase-like (PK-like) 673 905 IPR011009 -
Trre6g04790 975 FunFam F-box protein At1g78280 112 369 - -
Trre6g04790 975 Pfam Cupin-like domain 150 371 IPR041667 -
Trre6g04790 975 SUPERFAMILY F-box domain 14 71 IPR036047 GO:0005515
Trre6g04790 975 Gene3D - 6 95 - -
Trre6g04790 975 ProSiteProfiles JmjC domain profile. 221 384 IPR003347 -
Trre6g04790 975 Pfam F-box-like 23 67 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04790 Trre-Chr6 50760802 50770124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04790 10 971 Glycosyltransferase AT1G78280 61.483 0.0 1205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre6g04790 Cupin_8 1.5e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04790 - - tpra:123918034 1967.59