Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04780 ATGGAGAACAACAACAACAACCAACAACAATATCCAACGCCACAACCCACGGCGGTTACATCCGCAGCACCATTCCAACACCTTCTCCAACAACAACAACAACAGCTTCAAATGTTCTGGTCATACCAAAGACAAGAAATCGAACACGTTAACGATTTCAAAAACCACCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCCGATGAAGATGTTCGTATGATCTCTGCCGAAGCACCAATCCTTTTCGCCAAAGCATGTGAACTTTTCATTCTTGAACTCACCATTCGTTCATGGCTTCATGCTGAAGAAAATAAACGAAGAACATTACAGAAAAACGACATTGCTGCAGCTATTACTCGTACAGATATTTTTGATTTTTTGGTTGATATTGTTCCTAGAGATGAGATTAAAGAAGAAGGTACTATTGTTGGTGCTACTGCTAGTGGTGTTCCTTATTATTATCCTCCTATTGGTCAGCCTGCTGGTGGAATGATGATTGGTCGTCCGGCTGTTGATCCGGCTACCGGTGTTTATGTTCAGCCTCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACTGGTGCTGATGATGGTTCGTATGCGGCTGCCGGTGGTAGTGGTGGTCAGCACAATGTCGATGGCCAGAGCTGA 654 0.4404 MENNNNNQQQYPTPQPTAVTSAAPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEGTIVGATASGVPYYYPPIGQPAGGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAAAGGSGGQHNVDGQS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04780 217 Gene3D Histone, subunit A 22 135 IPR009072 GO:0046982
Trre6g04780 217 FunFam Nuclear transcription factor Y subunit gamma 26 135 - -
Trre6g04780 217 SUPERFAMILY Histone-fold 8 129 IPR009072 GO:0046982
Trre6g04780 217 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 30 150 - -
Trre6g04780 217 Pfam Core histone H2A/H2B/H3/H4 4 120 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04780 Trre-Chr6 50670919 50673595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04780 18 217 CCAAT-HAP5 Transcription Factor Family AT3G48590 80.476 2.46e-104 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre6g04780 Histone 1.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04780 - - pop:7454724 337.806