Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04778 ATGGAATGCAGAAAAGATGATGCCTTAAGGGCTAAAGAGATCGCAGAGAAGAGGTTTTTAGAAAAGAAGTTTGTTGCTGCAAGTACACTTGCAAAGAAGGCTCAATCCTTGTATCCCAACATTGACGGCCTCCCTGCACTGATAGCAACCATGGATGTGTATGTCGCTTCTCTAAACACAGTTGGTGAAGAATATGATTGGTATGAGATCCTCGGTGCAAAACGCTTGGATGATGATGAAACGCTTCGGAAATGTTATAAGAACTTGGCTCTTATTCTGCACCCTGATGAAAACAAGTCAGTAGGTGCGGAGGGCGCATTTAATCTTGTCTTACAGGCTTGGACTATATTATCTGATAAAGCTAAGAGAACCACCTTTGATAAAAAGTATCGCTTGTGGGATTTGTTTAAAGATATGCCTGGTGGGATACCTCCTATACTTGCTAGTCAGTACGGTTTGTCGAATACCGTTAACCCTGCTGGGAGACCTTCTGTACCCGCTAGTCAGAATGGTTTGTCTAATGCCGCTAACCCTGCTAGGAGACCTCCTACATTTTGGACCTTGTGCAGTTTCTGCAGAACATATTATGAGTACCTTGCTATCTATAAAGACTGCAATCTTGCCTGCACCACCTGCAAAAAGCCATTTTTAGCTTCTGAGGTACCACCCCCATCTGTATACAAAAATGCATCATCCACTTCAAGACCTTCTCAGATGAAGCAACACAAATTCGACTCAACTGGAGTGGATAGAAACTGTCATGTTTCAAGTAGGACACAGGTGTCGGCTGTCAACTCATCGCTTGGTTCTATGCCTAGTGGCATTTCTGGTGGAACTCTCGGTTCTTTTACGAGGCCATCTGCGAATTTGAAGAGAAAGTATGAAGATTCAGCACCTGTCATGAGGGAGGAGGTGCATTTTGGAAAAACTCATGCTGTTGAGAGAACTCCTGGTGGTTCAGATTTTCAGTCTTGTCAGAAAAAAAGGTGCACAGGTGAACATAAAGTTGATGGTGATAGAAGAGACATGGAAATTGAGATGGCATTAAAAAAAGGAATAAATTTGACCAATGGGTTTGGGTCTCTGAAGAATAGTTTTGATGCTGGAAAGGTTAGTGTTGCTGGAAATTTCAGACGAAATGGTATTAGGGACATGTCTCAGCAGCAAATGAGGAACATCTTGGCGGGAAAGGCCCGGAATGTGATTCTTAAGAAGCTTGATGAGTTGAAGGAGAGTCGTAGAAAGCTTGATAAGTGGAAGGCGGTTCGTGAAACGCTTGATGAACGGTATCCGTCTTCTATACTAAAGAATACTGAATCAGAAGTCAGAGTGAAAGACACAGTTAAGGCTATTAATGGTGTGAAGCCTGGTCCACAAGCAATTCTTGATTCTGAGACCAACAACAACTTTATCTCTGCTGATTCAGAGGTGCTTGGAGTCTCCATGGATGTTCCAGACCCAGATTTCCATGATTTTGATGGGGACCGGGTTGAGGACACTTTTGGTGAGAATCAGGTGTGGGCTGTTTATGATGATGATGATGGCATGCCGCGCTACTATGCCTTTATCCACAGTGTGATCTCAAAGAAACCTTTCCAAATGAAGATAAGCTGGCTGAGCTTTAAAACCAATGATGAATTGGCACCGATAAGGTGGGTGGCATCTGGCTTTCCAAAGACCACCGGGGATCTCCGACTAGGCAAGCGTGCAATCGCTAGCACTCTCAATTCTTTCTCGCACAGGGTCGAGTGGACAAAAGGTTCAAGAGGACTTATCCATATATATCCAAAGAAAGGTGAAGTTTGGGCTCTATATCGGAACTGGTCCCTGGATTGGGATGAACTCACTAAAGACCAAATCATACATCAATATGACATGGTGGAAGTGCTTGGAGACTACAGTGAAGAGCACGGTGTGAATGTTGCTCCGCTTTTCAAGGTTGCAGGTTTCAGGACTGTTTTCCGCAAGAATGCTGATCCGAGAAAAATCAGAAACATTCCGAGGGCAGAAATGTTTCGTTTTTCACACCAGGTACCGTCATACTTGCTTACTGGACAAGAAGGTGACAATGCTCCTGAAGGTTGCTTGGAACTGGATCCTGCTTCTACACCTATGGAACTTCTCCAGTTGACCACCGATGATGCTCCAAAGCAAGAAGATTCTGCTGAAGATGTTCCGAGAAAGGAGATGGCTGAAGCAAATGAAGGGAGGGCATGGCCTGAGAATTTGCATGTATATAAGCGGATGCGTTTTGGGGGAAAGAGCAAGTAG 2271 0.4421 MECRKDDALRAKEIAEKRFLEKKFVAASTLAKKAQSLYPNIDGLPALIATMDVYVASLNTVGEEYDWYEILGAKRLDDDETLRKCYKNLALILHPDENKSVGAEGAFNLVLQAWTILSDKAKRTTFDKKYRLWDLFKDMPGGIPPILASQYGLSNTVNPAGRPSVPASQNGLSNAANPARRPPTFWTLCSFCRTYYEYLAIYKDCNLACTTCKKPFLASEVPPPSVYKNASSTSRPSQMKQHKFDSTGVDRNCHVSSRTQVSAVNSSLGSMPSGISGGTLGSFTRPSANLKRKYEDSAPVMREEVHFGKTHAVERTPGGSDFQSCQKKRCTGEHKVDGDRRDMEIEMALKKGINLTNGFGSLKNSFDAGKVSVAGNFRRNGIRDMSQQQMRNILAGKARNVILKKLDELKESRRKLDKWKAVRETLDERYPSSILKNTESEVRVKDTVKAINGVKPGPQAILDSETNNNFISADSEVLGVSMDVPDPDFHDFDGDRVEDTFGENQVWAVYDDDDGMPRYYAFIHSVISKKPFQMKISWLSFKTNDELAPIRWVASGFPKTTGDLRLGKRAIASTLNSFSHRVEWTKGSRGLIHIYPKKGEVWALYRNWSLDWDELTKDQIIHQYDMVEVLGDYSEEHGVNVAPLFKVAGFRTVFRKNADPRKIRNIPRAEMFRFSHQVPSYLLTGQEGDNAPEGCLELDPASTPMELLQLTTDDAPKQEDSAEDVPRKEMAEANEGRAWPENLHVYKRMRFGGKSK 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04778 756 Gene3D DnaJ domain 65 131 IPR036869 -
Trre6g04778 756 MobiDBLite consensus disorder prediction 225 243 - -
Trre6g04778 756 Pfam DnaJ domain 66 127 IPR001623 -
Trre6g04778 756 MobiDBLite consensus disorder prediction 716 736 - -
Trre6g04778 756 MobiDBLite consensus disorder prediction 713 736 - -
Trre6g04778 756 SUPERFAMILY Chaperone J-domain 58 131 IPR036869 -
Trre6g04778 756 PRINTS DnaJ domain signature 68 86 IPR001623 -
Trre6g04778 756 PRINTS DnaJ domain signature 102 122 IPR001623 -
Trre6g04778 756 PRINTS DnaJ domain signature 86 101 IPR001623 -
Trre6g04778 756 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Trre6g04778 756 Coils Coil 409 429 - -
Trre6g04778 756 SMART dnaj_3 65 122 IPR001623 -
Trre6g04778 756 Pfam Domain of unknown function (DUF3444) 481 687 IPR024593 -
Trre6g04778 756 CDD DnaJ 66 119 IPR001623 -
Trre6g04778 756 MobiDBLite consensus disorder prediction 224 251 - -
Trre6g04778 756 PANTHER BNAC03G44070D PROTEIN 1 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04778 Trre-Chr6 50663702 50666299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04778 5 226 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 27.826 4.44e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04778 - - tpra:123918026 1133.24