LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g04773	ATGGTTTCAATAAAAGAGAAATTGAAGAAATTTGTAGGACACAGATGGGTGGTGTTTGTGTGTTCAATGTGGGATATGTCATTTGCAGGCACAGCATACATGTTTGGAAGCATATCACCAGTGATAAAAAGCAGCATGGGTTACAATCAGAAACAAGTTGCTTTCTTAAGTGTTGCTAAGGATTTGGGTGACAACGTTGGACTTCTTGCTGGTTTTATCAGTAAGGTTTGGCCTGTTTGGGGAGTTATACTTGTTGGTGTTGTTCAGAATGTTGTTGGTTATGGTCTTGTTTGGCTTGTTGTTACTCACAGGATTCCTTCTTTGCCTTTATGGATGCTATGTTTTTTCATCCTTGTGGGACAAAATGGATCAACATACTACAACACAGCAGCATTGGTTTCAAGCGTGCAAAGTTTCCCAGAAAACCGAGGCCCCGTGGTGGGAATATTGAAGGGATTTGTTGGCTTAAGCGGCGCCATATGGACTCAAATTCTAGCCATGATCAATCTCCCTGATCAAGCTTCTTTGATTTTCATCATAGCGGTTGGTCCTGCAATGGTTTCTTTAACCTTCATGTTCATAATAAGACCAGTTCATAGTTTGAATAAATCTAGACCCTCTGATGAATCAGGATTTATGTTTATCTATAGCATTTGTCTTCTCTTAGCTGCTTATCTTATGGGAGTTTTGTTGCTAGAGAACATGTTTGATTTGGATCAAAAAGTTATCACTTTATTTGCTGTCATTTTGATTGTTTTTATATTGCTTCCAATTATAGTTCCTATTCTATTGGTTTTCTTTTCTGAACCGAAAAGTATCGATGAGGAACAGCTTCTTCAACCTTCAATGGTTATGCAGAATGAAACTAGTAGCGATAATGCCATTTCAAAACACGTTGTTTTTGAAGATCAGAACAAGTCTTCAAATCTAGAGGTACCTCCAAGGGATATGGTTCAATTTCATGCTAGAGTTTTCCAAGCAATAACTTCAGCTATGAAGAAAATCAAGCAAAAAAATGGGCCTCATAGAGGAGAGGATTTCACCTTAACACAAGCACTTGTAAAAGCTGATTTTTGTCTCATGTTCTTGTCTATCATCTTGGGCTGTGGATCTGGTTTGACAATGATAAACAACATGGGTCAGATTTGTCAATCTTTGGGAGACAACAATGTTAATGTTTACGTATCGGTTATCAGCATATCCAATTTCCTTGGCCGTGTTGGTGGTGGCTACTTCTCTGAAGTTATAGTAAGAAACTTTGGATACCCGAGACTTGTGGCATTGGCGATTATTCAGGGAGTGATGTCTTTGGGACTTTGCTACTATACCATAGGCTTGGTTGGACAAGTTTATGTGATAGCAATAACAATGGGTTTTGGGTATGGTTCACATTGGTCAATTGCATTAGCAGCAACTTCAGAAATATTTGGGTTAAAGAATTTTGGTACACTCTACAATTTTCTTACAATTGCTAGCCCAGTTGGATCTCTGCTTGTATCTGGATTAGCAAGCACGATATACGATTATTACGCAGAGCAGCAAGCAAAACATAGAAATGATAATGAATTGCTTCTTTGTGAGGGAAACATTTGCTATTCCTTAACATGTGGAATTTTAGCAGTAGTTTGTTTGTTTGCAGCTGGTTTGAGCTTGATCATAGTTCAAAGGACTAAGAGGTTTTATTCACAACTTTATGGAAAGTCTTTATCTTGA	1713	0.38	MVSIKEKLKKFVGHRWVVFVCSMWDMSFAGTAYMFGSISPVIKSSMGYNQKQVAFLSVAKDLGDNVGLLAGFISKVWPVWGVILVGVVQNVVGYGLVWLVVTHRIPSLPLWMLCFFILVGQNGSTYYNTAALVSSVQSFPENRGPVVGILKGFVGLSGAIWTQILAMINLPDQASLIFIIAVGPAMVSLTFMFIIRPVHSLNKSRPSDESGFMFIYSICLLLAAYLMGVLLLENMFDLDQKVITLFAVILIVFILLPIIVPILLVFFSEPKSIDEEQLLQPSMVMQNETSSDNAISKHVVFEDQNKSSNLEVPPRDMVQFHARVFQAITSAMKKIKQKNGPHRGEDFTLTQALVKADFCLMFLSIILGCGSGLTMINNMGQICQSLGDNNVNVYVSVISISNFLGRVGGGYFSEVIVRNFGYPRLVALAIIQGVMSLGLCYYTIGLVGQVYVIAITMGFGYGSHWSIALAATSEIFGLKNFGTLYNFLTIASPVGSLLVSGLASTIYDYYAEQQAKHRNDNELLLCEGNICYSLTCGILAVVCLFAAGLSLIIVQRTKRFYSQLYGKSLS	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g04773	570	SUPERFAMILY	MFS general substrate transporter	210	559	IPR036259	-
	Trre6g04773	570	CDD	MFS_Mch1p_like	14	547	-	-
	Trre6g04773	570	Gene3D	MFS general substrate transporter like domains	358	561	IPR036259	-
	Trre6g04773	570	Pfam	Nodulin-like	15	262	IPR010658	-
	Trre6g04773	570	SUPERFAMILY	MFS general substrate transporter	14	197	IPR036259	-
	Trre6g04773	570	PANTHER	UNCHARACTERIZED NODULIN-LIKE PROTEIN	16	562	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g04773	Trre-Chr6	50623860	50629012	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g04773	3	568	Nodulin-like Gene Family	AT5G14120	50.000	0.0	558

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g04773	-		-	gmx:100784744	822.772