Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04762 ATGGATTGGAATCTGAAAACATCTTCTTGGGATTTGGAGGGTATAGAAGAAGCAACATTACCAAACATAGAAACAATGGAAGAAGAAGAAGAATCAAACAGATTTGGGAAATTTTCTGTTGATTTAAAGCTTGGTCAAGTTGAGAATTCTGTCACTGATCAATCATCATCATCACCACTTCCTTTATGCAAAGATTCTGCTATTGTTGTTTCCAAAATGGCATCATCACCTTCTTGTTCTGGATCTTATAAGAGAGCTAGAACTATTAATAATACAACATTGTCAGTTTCTTGTCTTGTGGATGGGTGTAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCCAAAACTCCTGAGGTTACAATTGCTGGCCTTAAGCAAAGATTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGACCAATTTGATGAAAGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACCGAAGGAGAAGAAAACCTCAACCAGAACCTATCACAAGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCTTTTTCAAGTTCTACTACCATGGTGAATTCAGCTTGGAGTAGTAGCAGACTCATTACTTCCTGTGAAAGTAGTAGACTTCACATCAACAACAATCAACAACACCAACAACTACATGTGGTTGATAAACAAGACCATTTTCTTGGTTCTACAACACCAACCTATGGAGAAGGAAAACAACTTCAATTCTTACACAATGACAACAACAATAATCCTTCACTTCATAACCAAAACACACCTCTTCTCAGGACAAGTAGCAAAATGTTCTGTGATAGTTTAACAACTTCTTCAGTACATGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACACATACATCTCATTCAATGGTGCAGCAGCCTCATTCAATGTCTCTTATGCAGCCACCCTTAGGATTGAGCCTGCATGGCAACAACAACAACAGCTTTGAGTCTATGGATAGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCATTGTATAACATTGGTTCTGATGGATCACAAAGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG 1146 0.3874 MDWNLKTSSWDLEGIEEATLPNIETMEEEEESNRFGKFSVDLKLGQVENSVTDQSSSSPLPLCKDSAIVVSKMASSPSCSGSYKRARTINNTTLSVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIAGLKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTTMVNSAWSSSRLITSCESSRLHINNNQQHQQLHVVDKQDHFLGSTTPTYGEGKQLQFLHNDNNNNPSLHNQNTPLLRTSSKMFCDSLTTSSVHESPCALSLLSSSQTHTSHSMVQQPHSMSLMQPPLGLSLHGNNNNSFESMDRVLVPNGSESDHCSSLYNIGSDGSQSNDAPQLFPYQWE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04762 381 Pfam SBP domain 98 171 IPR004333 GO:0003677
Trre6g04762 381 Gene3D - 89 159 IPR036893 GO:0003677|GO:0005634
Trre6g04762 381 FunFam Squamosa promoter-binding-like protein 14 89 159 - -
Trre6g04762 381 SUPERFAMILY SBT domain 96 177 IPR036893 GO:0003677|GO:0005634
Trre6g04762 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 357 IPR044817 GO:0003677
Trre6g04762 381 MobiDBLite consensus disorder prediction 159 184 - -
Trre6g04762 381 ProSiteProfiles Zinc finger SBP-type profile. 95 172 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04762 Trre-Chr6 50571735 50575169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04762 1 381 SBP-box Gene Family AT5G50670 39.312 1.29e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre6g04762 SBP 4.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04762 - - gmx:102664649 384.8