Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04748 ATGACGAATCCAGAAATAATCTCTACAGTTGAGCTTAATGTAAAGCAAGGAGAACCGATTCGAGTTCAACCTGCGGAAGAAACCGAAAAGGGACTCTACTTTCTTTCAAACCTCGATCAGAATATCGCGGTTCCAATGCGCACAATTTATTGCTTTAAATCAGAAACAAGAGGAAATGAAAAAGCTGCACAAGTTATAAAAGATGCTTTGTCAAAAATTCTTGTCCCTTATCATCCTATGGCAGGAAAATTAATTATAAGCTCAGAAGGGAAGTTGATTGTGGATAATACAGGGGAAGGTGCAGTATTTGTTGAGGCTGAAGCAGATTGTGGTATAGATGAAATTGGTGACTTAACAAAACCAGATCCTCATAGGCTTGGGAAATTGGTTTATAATACACCAGGTGCTAAGAATATATTAGAGATGCCTCTTATGACTGTTCAGGTGACAAAGTTCAAATGTGGAGGATTCACTTTGGGACTAAACATGATCCATTGCATGAAAGATGGACTATGTGCCATGGAGTTTGTGAATGCATGGGCTGAAACAGCCAGAGGTTTAGACTTAAAAATTCAACCATTTCTCGATCGAACCATACTCAAATCGCGCAACCCTCCCAAAATAGAATTCCAACACCACGAATTCGACCAACTAGAAGATTTATCAAACTCCGAAAAAATCTATGAAGGAGAGAAAATCATCCATAAATCGTTCTTTTTCAATCCTGAAAAACTCGATTCGCTCAAGAAAAAGGCGACAGAAGACGGAGTTTTAAAAAAATGTTCAACTTTTGAAGCACTCTCGGCTTTTGTATGGAGAGCTAGAACTTCGGCTTTAAAAATGCATCCTGATCAACAAACAAAATTACTCTTCGCAGTTGATGGACGGTCGAGATTCGTTCCGCCAATACCAAAGGGATATTTTGGCAATGCTATTGTGCTAACAAATTCTTTGTGTAAAGCAAGTGATTTATTAGAGAACCCTTTTTCATTTTCAGTTGGATTGGTTCACAAGGCAATTGATATGGTAACAGATAGTTATATGAGATCAGCTATTGATTATTTTGAGGTAACAAGAGCTAGACCTTCTTTAACAGGAACACTTTTGATTACAACATGGACTAAATTGTCTTTTGACACTACTGATTTTGGTTGGGGTGAACCTTTGTGTTCTGGTCCTGTTACATTGCCTGATAAAGAAGTGATTTTATTCTTGTCACATGGTCAAGGAAGAAAAGGTATAAGTGTGCTTCTTGGCTTGCCTGATTCTGCTATAAAACGTTTTGAAGAATTGGTGACTAATATGGTGTGA 1311 0.3783 MTNPEIISTVELNVKQGEPIRVQPAEETEKGLYFLSNLDQNIAVPMRTIYCFKSETRGNEKAAQVIKDALSKILVPYHPMAGKLIISSEGKLIVDNTGEGAVFVEAEADCGIDEIGDLTKPDPHRLGKLVYNTPGAKNILEMPLMTVQVTKFKCGGFTLGLNMIHCMKDGLCAMEFVNAWAETARGLDLKIQPFLDRTILKSRNPPKIEFQHHEFDQLEDLSNSEKIYEGEKIIHKSFFFNPEKLDSLKKKATEDGVLKKCSTFEALSAFVWRARTSALKMHPDQQTKLLFAVDGRSRFVPPIPKGYFGNAIVLTNSLCKASDLLENPFSFSVGLVHKAIDMVTDSYMRSAIDYFEVTRARPSLTGTLLITTWTKLSFDTTDFGWGEPLCSGPVTLPDKEVILFLSHGQGRKGISVLLGLPDSAIKRFEELVTNMV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04748 436 Pfam Transferase family 21 430 - -
Trre6g04748 436 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 430 - -
Trre6g04748 436 FunFam Spermidine hydroxycinnamoyl transferase 12 215 - -
Trre6g04748 436 Gene3D - 217 434 IPR023213 -
Trre6g04748 436 FunFam Tryptamine hydroxycinnamoyl transferase 219 433 - -
Trre6g04748 436 Gene3D - 13 216 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04748 Trre-Chr6 50403227 50406307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04748 10 432 Monolignol Biosynthesis Gene Families AT5G48930 35.147 8.74e-85 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04748 K15400 - gmx:100794490 718.768