Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04747 ATGGGCAGTATAAAAGGAAAATGTAAGAAGGATGTGATATTAAAGGCATGGCGATCATTTGGAGGTGGAGGTGGAGGTGGCAATAGCAATATGAGGTCACTATTACTTAATAAGGGTACTTCAAAATCATTTTCACAAAATGTGAAGGGTAAAATATTAAAAACCCCAAATGGTTGTTTTTCAGTTTATGTTGGACCTCAAAGACAAAGATTTGTTGTAGAGACCAAGTTTGTTAACCATCCATTATTCAAGATGTTACTAGATGAAGCAGAGGTGGAATATGGGTTTCAAAATGATGGCCCTATTAGGCTTCCATGTAATGTTGATTTGTTCTATAAAGTATTGGCTGAGATGAATAATTTTGTGGAAGAGGATCATATTAATGAGGCTAAGGGGATTTCTTGTTTTTGTTCTTCCAAACCCAGCATCTATTCTTTGTTATATGAATAA 450 0.3489 MGSIKGKCKKDVILKAWRSFGGGGGGGNSNMRSLLLNKGTSKSFSQNVKGKILKTPNGCFSVYVGPQRQRFVVETKFVNHPLFKMLLDEAEVEYGFQNDGPIRLPCNVDLFYKVLAEMNNFVEEDHINEAKGISCFCSSKPSIYSLLYE 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04747 149 Pfam Auxin responsive protein 50 116 IPR003676 GO:0009733
Trre6g04747 149 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 45 114 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04747 Trre-Chr6 50401561 50402010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04747 56 125 Calmodulin-binding Proteins AT3G43120 44.286 1.86e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04747 K14488 - gmx:100789525 131.724