Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04739 ATGAAGTTTGTGAAAAATGGAGTAAGCAATAAATTGCCTCCTGGTTTTCGTTTTCAGCCGACAGACGAAGAGCTTGTTTTTCAGTACTTGAAATGTAAAACCTTCTCCTATCAGTTGCCAGCTTCAATCATTCCTGAGATCAATGTCTGCAACTATGATCCTTGGGATTTGCCAGGAAATCATGGTGAGCAAGATAAGTATTTCTTCAGTGCTAAGGAAGCCAAGTATCGAAATGGCAATCGAATGAACAGATCAACCAACTCCGGCTATTGGAAGGCGAGTGGATCAGATAAGAAAGTTAGTGTTTCTTCATCAATAAGTAATGGAGGAATTGCAGGGATAAGAAAAACTCTTGTATTTTATAAAGGAAAATCTCCAAATGGAACTCGAACTCATTGGATCATGCATGAATATCGTCTAGTTAGTGTAGAAACTACTGCTTGTAATCAGAGTTTCTATGGAAACGAGATAGGGGATTGGGTTCTATGTCATATATTCATGAAGAAAAGAAGTAATATAATGATGATGAATACTAATGTTGACGCAGCTCGGCCAAAATTCTTTGATTTTATGATGGTGCACAACTCATCAACTCCGAACCCTACTACACATTTTTCGTCATCCTCGTCTTGTTCAAGTTCCGGTGAAGTATCTTCATCTGAAGAAAGATGCAGCTATATATATGCTGATTTTTAA 696 0.3764 MKFVKNGVSNKLPPGFRFQPTDEELVFQYLKCKTFSYQLPASIIPEINVCNYDPWDLPGNHGEQDKYFFSAKEAKYRNGNRMNRSTNSGYWKASGSDKKVSVSSSISNGGIAGIRKTLVFYKGKSPNGTRTHWIMHEYRLVSVETTACNQSFYGNEIGDWVLCHIFMKKRSNIMMMNTNVDAARPKFFDFMMVHNSSTPNPTTHFSSSSSCSSSGEVSSSEERCSYIYADF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04739 231 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 201 - -
Trre6g04739 231 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Trre6g04739 231 ProSiteProfiles NAC domain profile. 12 168 IPR003441 GO:0003677|GO:0006355
Trre6g04739 231 Gene3D NAC domain 21 173 IPR036093 GO:0003677|GO:0006355
Trre6g04739 231 SUPERFAMILY NAC domain 9 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04739 Trre-Chr6 50272483 50273443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04739 1 225 NAC Transcription Factor Family AT5G13180 48.031 4.07e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g04739 NAM 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04739 - - aprc:113868555 284.263