Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04738 ATGGAAAAGATGAAGTTTGTGAAAAATGGAGTAAGCAATAAATTGCCTCCTGGTTTTCGTTTTCAGCCGACAGACGAAGAGCTTGTTTTTCAGTACTTGAAATGTAAAACCTTCTCCTATCAGTTGCCAGCTTCAATCATTCCTGAGATCAATGTCTGCAACTATGATCCTTGGGATTTGCCAGGAAATCATGGTGAGCAAGATAAGTATTTCTTCAGTGCTAAGGAAGCCAAGTATCGAAATGGCAATCGAATGAACAGATCAACCAACTCCGGCTATTGGAAGGCGAGTGGATCAGATAAGAAAGTTAGTGTTTCTTCATCAATAAGTAATGGAGGAATTGCAGGGATAAGAAAAACTCTTGTATTTTATAAAGGAAAATCTCCAAATGGAACTCGAACTCATTGGATCATGCATGAATATCGTCTAGTTAGTGTAGAAACTACTGCTTGTAATCAGAGTTTCTATGGAAACGAGATAGGGGATTGGGTTCTATGTCATATATTCATGAAGAAAAGAAGTAATATAATGATGATGAATACTAATGTTGACGCAGCTCGGCCAAAATTCTTTGATTTTATGATGGTGCACAACTCATCAACTCCGAACCCTACTACACATTTTTCGTCATCCTCGTCTTGTTCAAGTTCCGGTGAAGTATCTTCATCTGAAGAAAGATGCAGCTATATATATGCTGATTTTTAA 705 0.3759 MEKMKFVKNGVSNKLPPGFRFQPTDEELVFQYLKCKTFSYQLPASIIPEINVCNYDPWDLPGNHGEQDKYFFSAKEAKYRNGNRMNRSTNSGYWKASGSDKKVSVSSSISNGGIAGIRKTLVFYKGKSPNGTRTHWIMHEYRLVSVETTACNQSFYGNEIGDWVLCHIFMKKRSNIMMMNTNVDAARPKFFDFMMVHNSSTPNPTTHFSSSSSCSSSGEVSSSEERCSYIYADF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04738 234 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Trre6g04738 234 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 202 - -
Trre6g04738 234 Gene3D NAC domain 24 176 IPR036093 GO:0003677|GO:0006355
Trre6g04738 234 ProSiteProfiles NAC domain profile. 15 171 IPR003441 GO:0003677|GO:0006355
Trre6g04738 234 SUPERFAMILY NAC domain 12 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04738 Trre-Chr6 50272483 50273452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04738 1 228 NAC Transcription Factor Family AT5G13180 47.860 3.96e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g04738 NAM 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04738 - - aprc:113868555 290.041