Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04736 ATGGCTAATGAAATTCTCCATATGAAGCCAATCCACTTTTTCCAGATCATACCACCTCAAATCCTTCATCAAGGAAAGCTTATGATACCAAGAAAGTTTGTGGCGAAATATGGAGAATGTTTACCAAAAACTATATGTCTAAAGACTCCAAATGGTGTAAATTGGAAATTAAATTTGGTAAAAAGTGATGGCAAGTTATGGTTTGAAAAGGGTTGGAAAGAATTTGCAAAGTATCATTCTCTAGCTGATGGCCATCTTTTGCTTTTCAAATATGAAAAAACTTGCCATTTTCATGTTCACATCTTTGATAAGAGTACCTTTGAGATAAATTACCCTTTCACAAGAGTTGAAGCTAAAAGGGTTAAACCTTCAAATCATGAAGATTGTAGAGCAAGTCAAAAGAGAAAAGCTAACTCTTCCTTTGAAATTGGAAGTAGTAGTTGTGTTAAAGGAAAACAAGTGATCACTGATGCTGATAAAGTTTCAACACTTGAAAGAGCAAAAGCTTTCAGAACATGCAATCCATCCTTTGTTCTTGTCATGGGCGCATCATATGTTGAACACCATTTTCTTCTGACTATACAGGCTATGTTTGGCAAGAAACACTTTGATTTGAACAAGAAGCGAGGAGATATTTATTTTCAAGTGTCAAACAGGATAGTTTGGCCTGCAAGGTACCGGATAAGGTTGTCCCCTACAGGCTTAAAATTTGAACTCTCAAATGGATGGAAGACATTTGCCATAGACAATAACTTGAAAGTTGGCGATGTTTGCAACTTTGAGCTCATTCTTAGTACTAGTAATATGACCTTCCTAGTTCACATCTTTAGAGAGACAGATAAAGACAACACAAATAACTTAATGAAAGAAGAAGCTACTCAAAGAGTTGTATTAATTTGA 900 0.3522 MANEILHMKPIHFFQIIPPQILHQGKLMIPRKFVAKYGECLPKTICLKTPNGVNWKLNLVKSDGKLWFEKGWKEFAKYHSLADGHLLLFKYEKTCHFHVHIFDKSTFEINYPFTRVEAKRVKPSNHEDCRASQKRKANSSFEIGSSSCVKGKQVITDADKVSTLERAKAFRTCNPSFVLVMGASYVEHHFLLTIQAMFGKKHFDLNKKRGDIYFQVSNRIVWPARYRIRLSPTGLKFELSNGWKTFAIDNNLKVGDVCNFELILSTSNMTFLVHIFRETDKDNTNNLMKEEATQRVVLI 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04736 299 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Trre6g04736 299 CDD B3_DNA 175 277 IPR003340 GO:0003677
Trre6g04736 299 SUPERFAMILY DNA-binding pseudobarrel domain 173 278 IPR015300 -
Trre6g04736 299 ProSiteProfiles B3 DNA-binding domain profile. 177 279 IPR003340 GO:0003677
Trre6g04736 299 PANTHER B3 DOMAIN-CONTAINING 9 267 - -
Trre6g04736 299 CDD B3_DNA 12 103 IPR003340 GO:0003677
Trre6g04736 299 SUPERFAMILY DNA-binding pseudobarrel domain 7 105 IPR015300 -
Trre6g04736 299 Gene3D - 154 281 IPR015300 -
Trre6g04736 299 Gene3D - 5 106 IPR015300 -
Trre6g04736 299 SMART B3_2 177 279 IPR003340 GO:0003677
Trre6g04736 299 SMART B3_2 13 105 IPR003340 GO:0003677
Trre6g04736 299 Pfam B3 DNA binding domain 16 104 IPR003340 GO:0003677
Trre6g04736 299 Pfam B3 DNA binding domain 177 278 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04736 Trre-Chr6 50260965 50262822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04736 13 116 B3 DNA Binding Superfamily AT4G01580 38.462 1.98e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g04736 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04736 - - mtr:11434552 443.736