Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04729 ATGAAGGAATCAGAATCATCAAACCCAATCACAACTTGCCTCAATCTCACCCATTCACTCTTAAACCACGAAATCCCCACCGTCCATCACTTAAAATCCAAATGGTCAATCTTCAAACTCAAACTCACCACACTCCAAACTCACCTCACCGATTTCTCCACCGACTACTCCAATTCCTCAACCACAAACCCTCTCTCTCTTCATCTCCTTCACTCCATCACTCAAACCCTAAACGACGCCGTTTCACTCTCTCAACACTGTCAATCTCACTCCCCTGACTTACCCCTCGGTAAACTCCAAACTCAAAGCCAACTCGACTCTCTCATCGCTACTCTCCACCGCCACGTCACCGACTGCGATGTTCTCTTCCGTAGTGGTCTTCTCCTCGAAACCCCCGCTTTCTCTAAACGTGAAGCCGTTCGATCTCTTTCTAGAAATCTCATCGCACGGTTACAAATCGGTTCGTCTGATTCACGCGCCATAGCGATCGACTCGCTTTTATCTCTTCTCAACGAAGATGATAAGAATGTTACCATAGCGGTTGCGCAGGGTGTAGTTCCGGTGCTCGTTCGTTTACTCGATTCGTCGTCGTCCTCTGATATGAAGGAGAAAACCGTCGCCGCCATTTCTAGAGTCTCCGTTGTGGAAAGCGGAAAAAACAACCTACTAGCGGAGGGGTTGTTGTTGCTTAATCATTTGCTTAGGGTTTTGGATTCTGGAAGTGGTTTAGCTATAGAGAAAGCTTGTATTACGCTTCAGGCGTTGAGTTTCACTAGAGATAATGCTAGAGCGATTGGATCTAGAGGTGGAATTTCGTCTCTGTTAGGGATTTGTCAAGGTGGGACGCCTGGTTCGCAAGCTTCTGCGGCGGCGGTTTTGAGGAATTTGGCGAAATTTAATGAAATTAGAGAGAATTTCGCGGAGGAGAATGCGGTTGTTGTTTTATTAGGGTTGGCTTCTTCTGGAACTGTGTTGGCGCAAGAGAATGCGATTGGTTGTGTGGCGAATTTGATTTCGGAGGATGAGAGTATGAGGGTTTTGGCTTTTAAAGAAGGTGGAGTTGAGTGTTTGAAGAATTTCTGGGATTCGGCTCCGGTGATTCAGAGTCTTGAAATTGGTGTTGAAATGTTGAGGTATTTGGCTATGACTGGTCCAATTGGTGAAGTTCTTGTTGCGGAAGGGTTTGTTGGGAGGGTACTGGGAGTGTTGAATTGTGATGTTTTAACGGTGAGGATTGCGGCTGCGCGAGCGGTTTATGCTATGGGTTTGAATGGTGGAGGCAAAACGAAAAAGGAAATGGGGGAATGTGGGTGTGTTCCTTTTTTGATTAAGATGTTGGATGGGAAAGGTGCGGAGGAGAAAGAATCTGCTGCAATGGCATTGTCGGTGTTACTACAACACCCTTTCAATAGAAGGATCTTTCGTAAGGATGAGAGGGGAATAGTTAGCGCAGTTCATCTGTTGAACCCTTCTTTGGTTAATTTGGATAAGAAATACCCTGTTTCGTTGTTGGTTTCGCTCTTGCATTCGAAGACTTGCAGGAAACAAATGGTGGCTGCAGGGGCTTGTGTATATACGCAGAAGCTTGTTGAATTGGATGTTCCAGGTTCGAAAAAATTGTTAGACGGACTTGGTCGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAA 1671 0.4584 MKESESSNPITTCLNLTHSLLNHEIPTVHHLKSKWSIFKLKLTTLQTHLTDFSTDYSNSSTTNPLSLHLLHSITQTLNDAVSLSQHCQSHSPDLPLGKLQTQSQLDSLIATLHRHVTDCDVLFRSGLLLETPAFSKREAVRSLSRNLIARLQIGSSDSRAIAIDSLLSLLNEDDKNVTIAVAQGVVPVLVRLLDSSSSSDMKEKTVAAISRVSVVESGKNNLLAEGLLLLNHLLRVLDSGSGLAIEKACITLQALSFTRDNARAIGSRGGISSLLGICQGGTPGSQASAAAVLRNLAKFNEIRENFAEENAVVVLLGLASSGTVLAQENAIGCVANLISEDESMRVLAFKEGGVECLKNFWDSAPVIQSLEIGVEMLRYLAMTGPIGEVLVAEGFVGRVLGVLNCDVLTVRIAAARAVYAMGLNGGGKTKKEMGECGCVPFLIKMLDGKGAEEKESAAMALSVLLQHPFNRRIFRKDERGIVSAVHLLNPSLVNLDKKYPVSLLVSLLHSKTCRKQMVAAGACVYTQKLVELDVPGSKKLLDGLGRGKIWGVFARP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04729 556 SMART arm_5 299 339 IPR000225 GO:0005515
Trre6g04729 556 SMART arm_5 173 214 IPR000225 GO:0005515
Trre6g04729 556 SMART arm_5 258 298 IPR000225 GO:0005515
Trre6g04729 556 SMART arm_5 426 466 IPR000225 GO:0005515
Trre6g04729 556 SUPERFAMILY ARM repeat 146 494 IPR016024 -
Trre6g04729 556 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 554 - -
Trre6g04729 556 Gene3D - 231 532 IPR011989 -
Trre6g04729 556 Gene3D - 133 230 IPR011989 -
Trre6g04729 556 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 184 227 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04729 Trre-Chr6 50212760 50214430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04729 145 299 U-box Gene Family AT1G71020 30.968 2.54e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04729 - - gmx:100807228 732.635